Construct: ORF TRCN0000470576
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016425.1_s317c1
- Derived from:
- ccsbBroadEn_11384
- DNA Barcode:
- TACATACAGACCTACACGTAGACC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF254 (9534)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000470576
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278665.2 | 100% | 100% | |
| 2 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348689.2 | 79.4% | 75.8% | (many diffs) |
| 3 | human | 440519 | ZNF724 | zinc finger protein 724 | XM_024451521.1 | 78% | 73.6% | (many diffs) |
| 4 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_145326.3 | 76.6% | 69.5% | (many diffs) |
| 5 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348688.2 | 74.8% | 70.7% | (many diffs) |
| 6 | human | 51427 | ZNF107 | zinc finger protein 107 | XM_024446791.1 | 72.8% | 68.1% | (many diffs) |
| 7 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256172.2 | 71.8% | 64.5% | (many diffs) |
| 8 | human | 7644 | ZNF91 | zinc finger protein 91 | XM_024451693.1 | 69.9% | 66.1% | (many diffs) |
| 9 | human | 340252 | ZNF680 | zinc finger protein 680 | NM_001130022.1 | 65.6% | 60.1% | (many diffs) |
| 10 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001348687.2 | 63.2% | 61% | (many diffs) |
| 11 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329974.1 | 61.1% | 53.7% | (many diffs) |
| 12 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271637.2 | 60.8% | 40.6% | (many diffs) |
| 13 | human | 340252 | ZNF680 | zinc finger protein 680 | XM_017012129.1 | 59.2% | 56.1% | (many diffs) |
| 14 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329971.1 | 48.8% | 43.6% | (many diffs) |
| 15 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329973.1 | 48.5% | 43.3% | (many diffs) |
| 16 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001367574.1 | 42.9% | 37.3% | (many diffs) |
| 17 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001367575.1 | 42.9% | 37.3% | (many diffs) |
| 18 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_001329972.1 | 42.4% | 37.2% | (many diffs) |
| 19 | human | 148206 | ZNF714 | zinc finger protein 714 | NR_117088.1 | 36.3% | (many diffs) | |
| 20 | human | 7757 | ZNF208 | zinc finger protein 208 | NR_138252.1 | 30.4% | (many diffs) | |
| 21 | human | 7697 | ZNF138 | zinc finger protein 138 | NM_001271639.2 | 19.9% | 17.1% | (many diffs) |
| 22 | human | 168417 | ZNF679 | zinc finger protein 679 | NM_153363.3 | 18.9% | 17.7% | (many diffs) |
| 23 | human | 168417 | ZNF679 | zinc finger protein 679 | XM_017011797.1 | 18.9% | 17.7% | (many diffs) |
| 24 | human | 7639 | ZNF85 | zinc finger protein 85 | NR_045830.2 | 15.8% | (many diffs) | |
| 25 | human | 100129543 | ZNF730 | zinc finger protein 730 | XM_017026115.2 | 15.1% | 13.2% | (many diffs) |
| 26 | human | 340252 | ZNF680 | zinc finger protein 680 | NM_178558.5 | 15.1% | 13.5% | (many diffs) |
| 27 | human | 148198 | ZNF98 | zinc finger protein 98 | NM_001098626.2 | 14.1% | 12.9% | (many diffs) |
| 28 | human | 10793 | ZNF273 | zinc finger protein 273 | NM_021148.2 | 14.1% | 13% | (many diffs) |
| 29 | human | 100129543 | ZNF730 | zinc finger protein 730 | NM_001277403.2 | 13.8% | 12.3% | (many diffs) |
| 30 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_203282.4 | 13.5% | 12.8% | (many diffs) |
| 31 | human | 170959 | ZNF431 | zinc finger protein 431 | XM_011527750.2 | 13.1% | 11% | (many diffs) |
| 32 | human | 171392 | ZNF675 | zinc finger protein 675 | NM_138330.3 | 12.6% | 10.9% | (many diffs) |
| 33 | human | 113835 | ZNF257 | zinc finger protein 257 | NM_033468.4 | 12.6% | 11% | (many diffs) |
| 34 | human | 7562 | ZNF708 | zinc finger protein 708 | NM_021269.3 | 12.3% | 11.3% | (many diffs) |
| 35 | human | 730087 | ZNF726 | zinc finger protein 726 | NM_001244038.2 | 12.2% | 11% | (many diffs) |
| 36 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_003429.5 | 12.1% | 10.2% | (many diffs) |
| 37 | human | 168374 | ZNF92 | zinc finger protein 92 | NM_152626.4 | 11.9% | 10.7% | (many diffs) |
| 38 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027204.2 | 11.8% | 10.9% | (many diffs) |
| 39 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355404.2 | 11.6% | 10.6% | (many diffs) |
| 40 | human | 7639 | ZNF85 | zinc finger protein 85 | NM_001256171.1 | 11.6% | 10.4% | (many diffs) |
| 41 | human | 388523 | ZNF728 | zinc finger protein 728 | NM_001267716.2 | 11.4% | 10.1% | (many diffs) |
| 42 | human | 7562 | ZNF708 | zinc finger protein 708 | XM_017027201.1 | 11.3% | 10.4% | (many diffs) |
| 43 | human | 7639 | ZNF85 | zinc finger protein 85 | XM_011528263.2 | 11% | 9.8% | (many diffs) |
| 44 | human | 148213 | ZNF681 | zinc finger protein 681 | NM_138286.3 | 10.9% | 9.9% | (many diffs) |
| 45 | human | 440519 | ZNF724 | zinc finger protein 724 | NM_001355406.2 | 10.8% | 9.8% | (many diffs) |
| 46 | human | 353088 | ZNF429 | zinc finger protein 429 | NM_001001415.4 | 10.4% | 9.6% | (many diffs) |
| 47 | human | 284443 | ZNF493 | zinc finger protein 493 | NM_001076678.3 | 10.2% | 8.9% | (many diffs) |
| 48 | human | 353088 | ZNF429 | zinc finger protein 429 | NM_001346912.2 | 10.1% | 9.2% | (many diffs) |
| 49 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256653.1 | 9.7% | 8.6% | (many diffs) |
| 50 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_003423.4 | 8.9% | 7.9% | (many diffs) |
| 51 | human | 148206 | ZNF714 | zinc finger protein 714 | NR_117087.1 | 8.9% | (many diffs) | |
| 52 | human | 170959 | ZNF431 | zinc finger protein 431 | XR_001753621.1 | 8.7% | (many diffs) | |
| 53 | human | 148206 | ZNF714 | zinc finger protein 714 | NR_117086.1 | 8.7% | (many diffs) | |
| 54 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256648.2 | 8.2% | 7.3% | (many diffs) |
| 55 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256649.2 | 8.2% | 7.3% | (many diffs) |
| 56 | human | 7594 | ZNF43 | zinc finger protein 43 | NM_001256650.2 | 8.2% | 7.3% | (many diffs) |
| 57 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528257.3 | 8.2% | 7.3% | (many diffs) |
| 58 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_011528259.3 | 8.2% | 7.3% | (many diffs) |
| 59 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027207.2 | 8.2% | 7.3% | (many diffs) |
| 60 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027208.2 | 8.2% | 7.3% | (many diffs) |
| 61 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027209.2 | 8.2% | 7.3% | (many diffs) |
| 62 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027210.2 | 8.2% | 7.3% | (many diffs) |
| 63 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027211.2 | 8.2% | 7.3% | (many diffs) |
| 64 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027212.2 | 8.2% | 7.3% | (many diffs) |
| 65 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027213.2 | 8.2% | 7.3% | (many diffs) |
| 66 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027214.2 | 8.2% | 7.3% | (many diffs) |
| 67 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027215.2 | 8.2% | 7.3% | (many diffs) |
| 68 | human | 7594 | ZNF43 | zinc finger protein 43 | XM_017027216.2 | 8.2% | 7.3% | (many diffs) |
| 69 | human | 7697 | ZNF138 | zinc finger protein 138 | NR_073391.2 | 8.2% | (many diffs) | |
| 70 | human | 7652 | ZNF99 | zinc finger protein 99 | NM_001080409.3 | 8.2% | 7.3% | (many diffs) |
| 71 | human | 340252 | ZNF680 | zinc finger protein 680 | XR_428175.4 | 8.1% | (many diffs) | |
| 72 | human | 113835 | ZNF257 | zinc finger protein 257 | NM_001316996.2 | 7.8% | 6.8% | (many diffs) |
| 73 | human | 340252 | ZNF680 | zinc finger protein 680 | XR_001744687.1 | 7.5% | (many diffs) | |
| 74 | human | 340252 | ZNF680 | zinc finger protein 680 | XR_002956428.1 | 7.4% | (many diffs) | |
| 75 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278661.1 | 7.3% | 6.6% | (many diffs) |
| 76 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278662.2 | 7.3% | 6.6% | (many diffs) |
| 77 | human | 9534 | ZNF254 | zinc finger protein 254 | NM_001278677.2 | 7.3% | 6.6% | (many diffs) |
| 78 | human | 9534 | ZNF254 | zinc finger protein 254 | XM_011528443.1 | 7.3% | 6.6% | (many diffs) |
| 79 | human | 9534 | ZNF254 | zinc finger protein 254 | XM_011528444.2 | 7.3% | 6.6% | (many diffs) |
| 80 | human | 9534 | ZNF254 | zinc finger protein 254 | XM_017027515.1 | 7.3% | 6.6% | (many diffs) |
| 81 | human | 7644 | ZNF91 | zinc finger protein 91 | NM_003430.4 | 7.1% | 6.6% | (many diffs) |
| 82 | human | 7644 | ZNF91 | zinc finger protein 91 | NM_001300951.2 | 6.9% | 4.5% | (many diffs) |
| 83 | human | 100287226 | ZNF729 | zinc finger protein 729 | NM_001242680.2 | 6.4% | 5.5% | (many diffs) |
| 84 | human | 388524 | RPSAP58 | ribosomal protein SA pseudo... | NR_149350.2 | 5.8% | (many diffs) | |
| 85 | human | 7757 | ZNF208 | zinc finger protein 208 | NM_007153.3 | 5.6% | 5% | (many diffs) |
| 86 | human | 10793 | ZNF273 | zinc finger protein 273 | NR_003099.1 | 5.5% | (many diffs) | |
| 87 | human | 7644 | ZNF91 | zinc finger protein 91 | XR_001753756.2 | 5% | (many diffs) | |
| 88 | human | 170959 | ZNF431 | zinc finger protein 431 | XR_001753620.1 | 4.7% | (many diffs) | |
| 89 | human | 7644 | ZNF91 | zinc finger protein 91 | XR_001753755.2 | 3.7% | (many diffs) | |
| 90 | human | 7644 | ZNF91 | zinc finger protein 91 | XR_001753754.2 | 2.9% | (many diffs) | |
| 91 | human | 170959 | ZNF431 | zinc finger protein 431 | NR_138053.2 | 2.8% | (many diffs) | |
| 92 | human | 170959 | ZNF431 | zinc finger protein 431 | NR_138052.2 | 2.7% | (many diffs) | |
| 93 | human | 7644 | ZNF91 | zinc finger protein 91 | XR_002958354.1 | 2.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 119
- ORF end:
- 392
- ORF length:
- 273
- Sequence:
-
1 GAGTTTGGAT CTTGGTTCAT TCTCAAGCCT CAGACAGTGG TTCAAAGTTT TTTTCTTCCA 61 TTTCAGGTGT CGTGAGGCTA GCATCGATTG ATCAACAAGT TTGTACAAAA AAGTTGGCAT 121 GCCAGGACCC CCTAGAAGCC TAGAAATGGG ACTGTTGACA TTTAGGGATG TGGCCATAGA 181 ATTCTCTCTG GAGGAGTGGC AACACCTGGA CATTGCACAG CAGAATTTAT ATAGAAATGT 241 GATGTTAGAG AACTACAGAA ACCTGGCCTT CCTGGGTATT GCTGTCTCTA AGCCAGACCT 301 GATCACCTGT CTGGAACAAG GGAAAGAGCC CTGGAATATG AAGCGACATG AGATGGTGGA 361 TGAACCCCCA GGATTGGATT TTTCATTACT GTGCCCAACT TTCTTGTACA AAGTGGTTGA 421 TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG 481 TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGATAC 541 ATACAGACCT ACACGTAGAC CACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt 601 tgtgaaagat t