Transcript: Human NM_001278319.1

Homo sapiens leukocyte immunoglobulin like receptor A1 (LILRA1), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-09-25
Taxon:
Homo sapiens (human)
Gene:
LILRA1 (11024)
Length:
1821
CDS:
49..1368

Additional Resources:

NCBI RefSeq record:
NM_001278319.1
NBCI Gene record:
LILRA1 (11024)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001278319.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000428412 GTGTGTTTCTGATGTCAGCTA pLKO_005 783 CDS 100% 2.640 1.848 N LILRA1 n/a
2 TRCN0000056875 CTCAGATCAATACACGAATAT pLKO.1 1153 CDS 100% 13.200 7.920 N LILRA1 n/a
3 TRCN0000056873 CCCACAGGAGATTGTGAAGAA pLKO.1 267 CDS 100% 4.950 2.970 N LILRA1 n/a
4 TRCN0000056874 GAGAAGATGAACACCCACAAT pLKO.1 527 CDS 100% 4.950 2.475 Y LILRA1 n/a
5 TRCN0000056877 GTTCTGTATAAGGAGGGAGAA pLKO.1 814 CDS 100% 4.050 2.025 Y LILRA1 n/a
6 TRCN0000364774 TGAGGAGATGCTTGCCGTGAT pLKO_005 1366 CDS 100% 4.050 2.025 Y LILRA3 n/a
7 TRCN0000056876 CCACACTTTCCTTCTGACCAA pLKO.1 1104 CDS 100% 2.640 1.320 Y LILRA1 n/a
8 TRCN0000056847 CGACAGATTTGTTCTGTATAA pLKO.1 804 CDS 100% 1.320 0.660 Y LILRA2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001278319.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07729 pDONR223 100% 91.5% 84.9% None (many diffs) n/a
2 ccsbBroad304_07729 pLX_304 0% 91.5% 84.9% V5 (many diffs) n/a
3 TRCN0000478306 AGCCAAGCTCAGGCTTTGGACACT pLX_317 25.7% 91.5% 84.9% V5 (many diffs) n/a
4 ccsbBroadEn_02599 pDONR223 100% 89.7% 89.5% None 1314T>A;1315_1316insC;1317_1318ins149 n/a
5 ccsbBroad304_02599 pLX_304 0% 89.7% 89.5% V5 1314T>A;1315_1316insC;1317_1318ins149 n/a
6 TRCN0000476912 AATATTGCGCGCAACCGAGCATCT pLX_317 19.2% 89.7% 89.5% V5 1314T>A;1315_1316insC;1317_1318ins149 n/a
7 ccsbBroadEn_07730 pDONR223 100% 81.7% 72.5% None (many diffs) n/a
8 ccsbBroad304_07730 pLX_304 0% 81.7% 72.5% V5 (many diffs) n/a
9 ccsbBroadEn_07695 pDONR223 100% 61.1% 56% None (many diffs) n/a
10 ccsbBroad304_07695 pLX_304 0% 61.1% 56% V5 (many diffs) n/a
11 TRCN0000477615 ACCTCCGGAGCACCCTCCTCATAA pLX_317 20.9% 61.1% 56% V5 (many diffs) n/a
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