Construct: ORF TRCN0000469377

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005867.1_s317c1
Derived from:
ccsbBroadEn_01376
DNA Barcode:
CGCATTGTATTTCGACTGGATGGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RARB (5915)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000469377
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5915 RARB retinoic acid receptor beta NM_000965.4 100% 100%
2 human 5915 RARB retinoic acid receptor beta NM_001290216.2 90.6% 84.8% (many diffs)
3 human 5915 RARB retinoic acid receptor beta NM_001290277.1 89.7% 89.7% 785_786ins138
4 human 5915 RARB retinoic acid receptor beta NM_001290300.1 89.5% 88.3% (many diffs)
5 human 5915 RARB retinoic acid receptor beta NM_001290266.1 88.6% 88.1% 0_1ins148;4_6delGAAinsCTC;10delG
6 human 5915 RARB retinoic acid receptor beta NM_001290217.1 75% 75% 0_1ins336
7 human 5915 RARB retinoic acid receptor beta NM_001290276.1 75% 75% 0_1ins336
8 human 5915 RARB retinoic acid receptor beta NM_016152.3 75% 75% 0_1ins336
9 human 5915 RARB retinoic acid receptor beta NR_110892.1 36.7% 1_469del;917_918ins161;1653_3061del
10 human 5915 RARB retinoic acid receptor beta NR_110893.1 35.3% 1_469del;1254_1255ins205;1609_3017del
11 mouse 218772 Rarb retinoic acid receptor, beta NM_011243.2 91% 98.4% (many diffs)
12 mouse 218772 Rarb retinoic acid receptor, beta NM_001289761.1 81.5% 84% (many diffs)
13 mouse 218772 Rarb retinoic acid receptor, beta NM_001289762.1 80.9% 87.2% (many diffs)
14 mouse 218772 Rarb retinoic acid receptor, beta NM_001289760.1 79.8% 84% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1410
ORF length:
1344
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgtt tgactgtatg gatgttctgt cagtgagtcc tgggcaaatc ctggatttct
121acactgcgag tccgtcttcc tgcatgctcc aggagaaagc tctcaaagca tgcttcagtg
181gattgaccca aaccgaatgg cagcatcggc acactgctca atcaattgaa acacagagca
241ccagctctga ggaactcgtc ccaagccccc catctccact tcctccccct cgagtgtaca
301aaccctgctt cgtctgccag gacaaatcat cagggtacca ctatggggtc agcgcctgtg
361agggatgtaa gggctttttc cgcagaagta ttcagaagaa tatgatttac acttgtcacc
421gagataagaa ctgtgttatt aataaagtca ccaggaatcg atgccaatac tgtcgactcc
481agaagtgctt tgaagtggga atgtccaaag aatctgtcag gaatgacagg aacaagaaaa
541agaaggagac ttcgaagcaa gaatgcacag agagctatga aatgacagct gagttggacg
601atctcacaga gaagatccga aaagctcacc aggaaacttt cccttcactc tgccagctgg
661gtaaatacac cacgaattcc agtgctgacc atcgagtccg actggacctg ggcctctggg
721acaaattcag tgaactggcc accaagtgca ttattaagat cgtggagttt gctaaacgtc
781tgcctggttt cactggcttg accatcgcag accaaattac cctgctgaag gccgcctgcc
841tggacatcct gattcttaga atttgcacca ggtatacccc agaacaagac accatgactt
901tctcagacgg ccttacccta aatcgaactc agatgcacaa tgctggattt ggtccTCTGA
961CTGACCTTGT GTTCACCTTT GCCAACCAGC TCCTGCCTTT GGAAATGGAT GACACAGAAA
1021CAGGCCTTCT CAGTGCCATC TGCTTAATCT GTGGAGACCG CCAGGACCTT GAGGAACCGA
1081CAAAAGTAGA TAAGCTACAA GAACCATTGC TGGAAGCACT AAAAATTTAT ATCAGAAAAA
1141GACGACCCAG CAAGCCTCAC ATGTTTCCAA AGATCTTAAT GAAAATCACA GATCTCCGTA
1201GCATCAGTGC TAAAGGTGCA GAGCGTGTAA TTACCTTGAA AATGGAAATT CCTGGATCAA
1261TGCCACCTCT CATTCAAGAA ATGCTGGAGA ATTCTGAAGG ACATGAACCC TTGACCCCAA
1321GTTCAAGTGG GAACACAGCA GAGCACAGTC CTAGCATCTC ACCCAGCTCA GTGGAAAACA
1381GTGGGGTCAG TCAGTCACCA CTCGTGCAAT ACCCAACTTT CTTGTACAAA GTGGTTGATA
1441TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1501CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACGCAT
1561TGTATTTCGA CTGGATGGTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1621tgaaagatt

Download FASTA (ORF) (Full)