Transcript: Mouse NM_001330056.1

Mus musculus insulin receptor (Insr), transcript variant 2, mRNA.

Source:
NCBI, updated 2017-06-16
Taxon:
Mus musculus (mouse)
Gene:
Insr (16337)
Length:
9391
CDS:
490..4644

Additional Resources:

NCBI RefSeq record:
NM_001330056.1
NBCI Gene record:
Insr (16337)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001330056.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000235969 ACACCGTAGGTATGGATATTT pLKO_005 6844 3UTR 100% 15.000 21.000 N Insr n/a
2 TRCN0000367973 CACCGTATCAAACCAAGATTT pLKO_005 4899 3UTR 100% 13.200 18.480 N Insr n/a
3 TRCN0000121284 CCAATACGTCATTCACAACAA pLKO.1 1395 CDS 100% 4.950 6.930 N INSR n/a
4 TRCN0000023574 CGTCTGGCTATACCATGAATT pLKO.1 1436 CDS 100% 0.000 0.000 N Insr n/a
5 TRCN0000235971 AGCTGTTTGAGCTGGATTATT pLKO_005 2495 CDS 100% 15.000 10.500 N Insr n/a
6 TRCN0000361291 TTGTCAAAGACAGACTATTTA pLKO_005 5089 3UTR 100% 15.000 10.500 N Insr n/a
7 TRCN0000361290 TTTAGATGTCCCATCAAATAT pLKO_005 3336 CDS 100% 15.000 10.500 N Insr n/a
8 TRCN0000235970 CAAGACCAGACCCGAAGATTT pLKO_005 687 CDS 100% 13.200 9.240 N Insr n/a
9 TRCN0000023575 CCCTGAAGGATGGAGTCTTTA pLKO.1 4115 CDS 100% 13.200 9.240 N Insr n/a
10 TRCN0000378460 GCTGGACTGTGGTGGATATTG pLKO_005 2153 CDS 100% 13.200 9.240 N Insr n/a
11 TRCN0000378453 AGAGACCCGTGTTGCGGTTAA pLKO_005 3645 CDS 100% 10.800 7.560 N Insr n/a
12 TRCN0000367964 AGGTGAGAAGACCATTGATTC pLKO_005 1518 CDS 100% 10.800 7.560 N Insr n/a
13 TRCN0000235968 CTATGCTCTGGTATCACTTTC pLKO_005 1689 CDS 100% 10.800 7.560 N Insr n/a
14 TRCN0000361292 GAAGTGAGCTATCGCCGATAT pLKO_005 3148 CDS 100% 10.800 7.560 N Insr n/a
15 TRCN0000361238 GCTGCCACCAATACGTCATTC pLKO_005 1388 CDS 100% 10.800 7.560 N Insr n/a
16 TRCN0000235972 TCTACGAGACAGATTACTATC pLKO_005 4046 CDS 100% 10.800 7.560 N Insr n/a
17 TRCN0000000382 CAGTGTTGTGATTGGAAGTAT pLKO.1 3399 CDS 100% 5.625 3.938 N INSR n/a
18 TRCN0000023578 CCACCCTTTGAGTCTGATGAT pLKO.1 2554 CDS 100% 4.950 3.465 N Insr n/a
19 TRCN0000023576 GCCATTTGAGAAAGTGGTGAA pLKO.1 2883 CDS 100% 4.050 2.835 N Insr n/a
20 TRCN0000023577 CGAGACAGATTACTATCGGAA pLKO.1 4050 CDS 100% 2.640 1.848 N Insr n/a
21 TRCN0000039702 CCTGTCTAATGAACAGGTGTT pLKO.1 4212 CDS 100% 0.405 0.284 N INSR n/a
22 TRCN0000166364 CACACACACACACACACACAA pLKO.1 5728 3UTR 100% 4.950 2.475 Y KAAG1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001330056.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 TRCN0000489232 CCATAATTGTCAGCCTTGTTAGTT pLX_317 1.3% 87% 95.1% V5 (many diffs) n/a
2 TRCN0000491410 ACTATATTCATACGTACTTCCCGA pLX_317 8.7% 87% 95.1% V5 (not translated due to prior stop codon) (many diffs) n/a
3 TRCN0000489414 ACATAGAATGGAGATTGAGGCCAA pLX_317 8.8% 86.2% 94.4% V5 (many diffs) n/a
4 TRCN0000487958 CAGGCTACCAGGCTAAGTTACTGC pLX_317 7.4% 86.2% 94.4% V5 (not translated due to prior stop codon) (many diffs) n/a
5 TRCN0000487917 TTCGCGCTATCTACGTCATTTCTA pLX_317 26.8% 24.2% 1% V5 (not translated due to prior stop codon) (many diffs) n/a
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