Transcript: Mouse NM_009034.4

Mus musculus retinol binding protein 2, cellular (Rbp2), mRNA.

Source:
NCBI, updated 2017-05-27
Taxon:
Mus musculus (mouse)
Gene:
Rbp2 (19660)
Length:
672
CDS:
74..478

Additional Resources:

NCBI RefSeq record:
NM_009034.4
NBCI Gene record:
Rbp2 (19660)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_009034.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000105572 GTGTGCCGACAAGTGTTCAAA pLKO.1 449 CDS 100% 5.625 7.875 N Rbp2 n/a
2 TRCN0000311929 GTGTGCCGACAAGTGTTCAAA pLKO_005 449 CDS 100% 5.625 7.875 N Rbp2 n/a
3 TRCN0000105574 CAGACGAAGATCATCACTCAA pLKO.1 188 CDS 100% 4.950 6.930 N Rbp2 n/a
4 TRCN0000105571 CGGTGATAACTTCAAGACGAA pLKO.1 211 CDS 100% 2.640 3.696 N Rbp2 n/a
5 TRCN0000348132 CTACATGAAGGCCCTAGATAT pLKO_005 130 CDS 100% 13.200 9.240 N Rbp2 n/a
6 TRCN0000312954 TACATGAAGGCCCTAGATATT pLKO_005 131 CDS 100% 13.200 9.240 N Rbp2 n/a
7 TRCN0000349835 CCGCAACTACGACCTGGATTT pLKO_005 247 CDS 100% 10.800 7.560 N Rbp2 n/a
8 TRCN0000348202 TGGAGAGTAATGAGAACTTTG pLKO_005 105 CDS 100% 10.800 7.560 N Rbp2 n/a
9 TRCN0000105573 GCTACATGAAGGCCCTAGATA pLKO.1 129 CDS 100% 5.625 3.938 N Rbp2 n/a
10 TRCN0000105570 GCCTGGAACATGTGCAGAGTT pLKO.1 492 3UTR 100% 4.950 3.465 N Rbp2 n/a
11 TRCN0000312001 GCCTGGAACATGTGCAGAGTT pLKO_005 492 3UTR 100% 4.950 3.465 N Rbp2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_009034.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06850 pDONR223 100% 87.3% 91% None (many diffs) n/a
2 ccsbBroad304_06850 pLX_304 0% 87.3% 91% V5 (many diffs) n/a
3 TRCN0000467825 ACCAGCCCAGTACCGGTAATTGCC pLX_317 92.1% 87.3% 91% V5 (many diffs) n/a
4 ccsbBroadEn_15564 pDONR223 0% 87% 90.2% None (many diffs) n/a
5 ccsbBroad304_15564 pLX_304 0% 87% 90.2% V5 (many diffs) n/a
6 TRCN0000470609 CTTGTTATCACCAGATCTTTCTTC pLX_317 92.1% 87% 90.2% V5 (many diffs) n/a
Download CSV