Transcript: Mouse NM_026693.5

Mus musculus gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2 (Gabarapl2), mRNA.

Source:
NCBI, updated 2017-05-28
Taxon:
Mus musculus (mouse)
Gene:
Gabarapl2 (93739)
Length:
996
CDS:
117..470

Additional Resources:

NCBI RefSeq record:
NM_026693.5
NBCI Gene record:
Gabarapl2 (93739)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_026693.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000336523 CGCGAAGATCAGAGCGAAGTA pLKO_005 170 CDS 100% 4.950 3.960 N Gabarapl2 n/a
2 TRCN0000048284 CCTAACTATGGGACAGCTTTA pLKO.1 380 CDS 100% 10.800 7.560 N GABARAPL2 n/a
3 TRCN0000289944 CCTAACTATGGGACAGCTTTA pLKO_005 380 CDS 100% 10.800 7.560 N GABARAPL2 n/a
4 TRCN0000120780 CATAGACAAGAGGAAGTACTT pLKO.1 245 CDS 100% 4.950 3.465 N Gabarapl2 n/a
5 TRCN0000120777 CCAGATTAAATCCTTAGCAAT pLKO.1 841 3UTR 100% 4.950 3.465 N Gabarapl2 n/a
6 TRCN0000048286 GACAGCTTTACGAGAAGGAAA pLKO.1 391 CDS 100% 4.950 3.465 N GABARAPL2 n/a
7 TRCN0000289947 GACAGCTTTACGAGAAGGAAA pLKO_005 391 CDS 100% 4.950 3.465 N GABARAPL2 n/a
8 TRCN0000120781 GCCTAACTATGGGACAGCTTT pLKO.1 379 CDS 100% 4.950 3.465 N Gabarapl2 n/a
9 TRCN0000120778 TGGAACACAGATGCGTGGAAT pLKO.1 148 CDS 100% 4.950 3.465 N Gabarapl2 n/a
10 TRCN0000336459 ATGAAGATGGATTCTTGTATG pLKO_005 415 CDS 100% 10.800 6.480 N Gabarapl2 n/a
11 TRCN0000336521 CTCAGTTCATGTGGATCATCA pLKO_005 289 CDS 100% 4.950 2.970 N Gabarapl2 n/a
12 TRCN0000336522 TTCCTGCTTGTGTCTCTTGTA pLKO_005 496 3UTR 100% 4.950 2.970 N Gabarapl2 n/a
13 TRCN0000353543 CCACAGTCCAGCCTAACTATG pLKO_005 369 CDS 100% 10.800 5.400 Y Gabarapl2 n/a
14 TRCN0000120779 TGGATTCTTGTATGTGGCCTA pLKO.1 422 CDS 100% 2.160 1.080 Y Gabarapl2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_026693.5, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15742 pDONR223 0% 93.1% 100% None (many diffs) n/a
2 ccsbBroad304_15742 pLX_304 0% 93.1% 100% V5 (many diffs) n/a
3 TRCN0000474868 TGCGTGAGGTTCCTACTACGACGC pLX_317 100% 93.1% 100% V5 (many diffs) n/a
4 ccsbBroadEn_02682 pDONR223 100% 92.8% 100% None (many diffs) n/a
5 ccsbBroad304_02682 pLX_304 0% 92.8% 100% V5 (many diffs) n/a
6 TRCN0000468289 AACCAAGTGTTCCATATACCACAC pLX_317 100% 92.8% 100% V5 (many diffs) n/a
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