Transcript: Mouse NM_207162.2

Mus musculus predicted gene, 20738 (Gm20738), mRNA.

Source:
NCBI, updated 2017-05-10
Taxon:
Mus musculus (mouse)
Gene:
Gm20738 (382133)
Length:
1209
CDS:
398..1081

Additional Resources:

NCBI RefSeq record:
NM_207162.2
NBCI Gene record:
Gm20738 (382133)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_207162.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000347896 CAACAAACCCTTCTCTTTATT pLKO_005 540 CDS 100% 15.000 7.500 Y Gm21394 n/a
2 TRCN0000255943 GGTGTCAAATATCACTTAAAT pLKO_005 1063 CDS 100% 15.000 7.500 Y Gm21943 n/a
3 TRCN0000347889 ACAAACCCTTCTCTTTATTTG pLKO_005 542 CDS 100% 13.200 6.600 Y Gm20917 n/a
4 TRCN0000347806 ATTTCTTGGTGACCTACATAT pLKO_005 1027 CDS 100% 13.200 6.600 Y Gm20867 n/a
5 TRCN0000347808 CAATTCTACTGTGTACTTTAT pLKO_005 1003 CDS 100% 13.200 6.600 Y Gm20867 n/a
6 TRCN0000178927 CAGAGAGGTACAACACAAATT pLKO.1 700 CDS 100% 13.200 6.600 Y Ssty2 n/a
7 TRCN0000347820 CCAACAAACCCTTCTCTTTAT pLKO_005 539 CDS 100% 13.200 6.600 Y Gm20823 n/a
8 TRCN0000182946 CCAATTCTACTGTGTACTTTA pLKO.1 1002 CDS 100% 13.200 6.600 Y Gm20738 n/a
9 TRCN0000347892 CCTACATATCTATGTCTATAT pLKO_005 1039 CDS 100% 13.200 6.600 Y Gm20823 n/a
10 TRCN0000255945 CTACTGTGTACTTTATCAAAT pLKO_005 1008 CDS 100% 13.200 6.600 Y Gm21943 n/a
11 TRCN0000262125 CTGGTGTCAAATATCACTTAA pLKO_005 1061 CDS 100% 13.200 6.600 Y Gm20815 n/a
12 TRCN0000347817 CTGTGTACTTTATCAAATTTC pLKO_005 1011 CDS 100% 13.200 6.600 Y Gm20917 n/a
13 TRCN0000178413 GCAGAGAGGTACAACACAAAT pLKO.1 699 CDS 100% 13.200 6.600 Y Gm20815 n/a
14 TRCN0000179795 GCCAACAAACCCTTCTCTTTA pLKO.1 538 CDS 100% 13.200 6.600 Y Gm20738 n/a
15 TRCN0000255944 GCCATTCTTACAGGACTATTT pLKO_005 775 CDS 100% 13.200 6.600 Y Gm21943 n/a
16 TRCN0000183457 GTCTATATTCTGGTGTCAAAT pLKO.1 1052 CDS 100% 13.200 6.600 Y Gm20738 n/a
17 TRCN0000347807 GTGATGACAATGACTTCTTAA pLKO_005 909 CDS 100% 13.200 6.600 Y Gm20867 n/a
18 TRCN0000255941 TGATGACAATGACTTCTTAAT pLKO_005 910 CDS 100% 13.200 6.600 Y Gm21943 n/a
19 TRCN0000262124 TGCCATTCTTACAGGACTATT pLKO_005 774 CDS 100% 13.200 6.600 Y Gm20815 n/a
20 TRCN0000347819 TGGTGTCAAATATCACTTAAA pLKO_005 1062 CDS 100% 13.200 6.600 Y Gm20823 n/a
21 TRCN0000363954 ACGGGTGGAAGCAAGGTAATG pLKO_005 477 CDS 100% 10.800 5.400 Y Gm20823 n/a
22 TRCN0000248126 ATCCGGTCCTCTACGTCTATC pLKO_005 816 CDS 100% 10.800 5.400 Y Ssty2 n/a
23 TRCN0000248128 CCCATTGGAAGGCCATCATTC pLKO_005 507 CDS 100% 10.800 5.400 Y Ssty2 n/a
24 TRCN0000347891 CGAGATCAGGTGATGACAATG pLKO_005 900 CDS 100% 10.800 5.400 Y Gm20917 n/a
25 TRCN0000347809 CTAGGTCAACTGCCAACAAAC pLKO_005 527 CDS 100% 10.800 5.400 Y Gm20867 n/a
26 TRCN0000347836 CTCTTTATTTGGTGAAGTATG pLKO_005 552 CDS 100% 10.800 5.400 Y Gm20852 n/a
27 TRCN0000347821 TAGCCCAGGTGCCATTCTTAC pLKO_005 765 CDS 100% 10.800 5.400 Y Gm20823 n/a
28 TRCN0000347912 TCCACAGCGATGAGAGGATTT pLKO_005 603 CDS 100% 10.800 5.400 Y Gm20854 n/a
29 TRCN0000257668 TGGTGAAGTATGACGGAATTG pLKO_005 561 CDS 100% 10.800 5.400 Y Ssty2 n/a
30 TRCN0000347938 TTACAAAGTTCTAGCCAATTC pLKO_005 988 CDS 100% 10.800 5.400 Y Gm20809 n/a
31 TRCN0000347937 TTTACAAAGTTCTAGCCAATT pLKO_005 987 CDS 100% 10.800 5.400 Y Gm20816 n/a
32 TRCN0000347936 TAATGAGCCTGTCACCCATTG pLKO_005 493 CDS 100% 6.000 3.000 Y Gm20816 n/a
33 TRCN0000347837 ACCCATTGGAAGGCCATCATT pLKO_005 506 CDS 100% 5.625 2.813 Y Gm20852 n/a
34 TRCN0000347939 CATTGGAAGGCCATCATTCTA pLKO_005 509 CDS 100% 5.625 2.813 Y Gm20809 n/a
35 TRCN0000348012 CTAGCCCAGGTGCCATTCTTA pLKO_005 764 CDS 100% 5.625 2.813 Y Gm20865 n/a
36 TRCN0000347846 GGTGAAGTATGACGGAATTGA pLKO_005 562 CDS 100% 5.625 2.813 Y Gm20854 n/a
37 TRCN0000179232 GTTCGGAAAGGTTGTTTACAA pLKO.1 973 CDS 100% 5.625 2.813 Y Ssty2 n/a
38 TRCN0000347910 TCTAGGTCAACTGCCAACAAA pLKO_005 526 CDS 100% 5.625 2.813 Y Gm20854 n/a
39 TRCN0000347935 ACCAGAGATGATGGATCCAAA pLKO_005 950 CDS 100% 4.950 2.475 Y Gm20816 n/a
40 TRCN0000347929 CAGCTCCTGGATGACTACAAG pLKO_005 836 CDS 100% 4.950 2.475 Y Gm20865 n/a
41 TRCN0000347930 CTGGTTTGCAGAGAGGTACAA pLKO_005 692 CDS 100% 4.950 2.475 Y Gm20865 n/a
42 TRCN0000347834 GATCCGGTCCTCTACGTCTAT pLKO_005 815 CDS 100% 4.950 2.475 Y Gm20852 n/a
43 TRCN0000184520 GCGAGATCAGGTGATGACAAT pLKO.1 899 CDS 100% 4.950 2.475 Y Gm21943 n/a
44 TRCN0000196103 GTGCAGTACACCAGAGATGAT pLKO.1 941 CDS 100% 4.950 2.475 Y Gm20738 n/a
45 TRCN0000347847 TCCGGTCCTCTACGTCTATCA pLKO_005 817 CDS 100% 4.950 2.475 Y Gm20854 n/a
46 TRCN0000348015 TGGTTTGCAGAGAGGTACAAC pLKO_005 693 CDS 100% 4.950 2.475 Y Gm20816 n/a
47 TRCN0000197481 CCCTTCTCTTTATTTGGTGAA pLKO.1 547 CDS 100% 4.050 2.025 Y Gm20815 n/a
48 TRCN0000184020 CTTAAGGTCTTGCCTCCCAAA pLKO.1 629 CDS 100% 4.050 2.025 Y Gm20738 n/a
49 TRCN0000189709 GAAAGATGGCTCTGAGGACAA pLKO.1 727 CDS 100% 4.050 2.025 Y Gm20747 n/a
50 TRCN0000202389 GTAATGAGCCTGTCACCCATT pLKO.1 492 CDS 100% 4.050 2.025 Y Gm20747 n/a
51 TRCN0000183216 GTTTACAAAGTTCTAGCCAAT pLKO.1 986 CDS 100% 4.050 2.025 Y Gm20738 n/a
52 TRCN0000348019 TTTGGTGAAGTATGACGGAAT pLKO_005 559 CDS 100% 4.050 2.025 Y Gm20809 n/a
53 TRCN0000192244 CTTCTTAATAGGTTCCTGGGT pLKO.1 922 CDS 100% 0.660 0.330 Y Gm20747 n/a
54 TRCN0000347897 CCATTCTTACAGGACTATTTG pLKO_005 776 CDS 100% 13.200 6.600 Y Gm21394 n/a
55 TRCN0000189115 GCTGCAGAATTTCTCACGGTT pLKO.1 462 CDS 100% 2.640 1.320 Y LOC385534 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_207162.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.