Transcript: Human NM_001351405.2

Homo sapiens lysophosphatidic acid receptor 1 (LPAR1), transcript variant 11, mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
LPAR1 (1902)
Length:
3611
CDS:
359..1453

Additional Resources:

NCBI RefSeq record:
NM_001351405.2
NBCI Gene record:
LPAR1 (1902)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001351405.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000377312 AGTCAACTCATGTACTTAAAC pLKO_005 1554 3UTR 100% 13.200 18.480 N LPAR1 n/a
2 TRCN0000369244 TTGCAATCGAGAGGCACATTA pLKO_005 783 CDS 100% 13.200 18.480 N LPAR1 n/a
3 TRCN0000221122 GCCATCGTTATGGGTGCTATA pLKO.1 881 CDS 100% 10.800 15.120 N LPAR1 n/a
4 TRCN0000364615 TGGACTATGGCCATCGTTATG pLKO_005 872 CDS 100% 10.800 15.120 N LPAR1 n/a
5 TRCN0000364616 TTTACTCCTACCGCGACAAAG pLKO_005 1287 CDS 100% 10.800 15.120 N LPAR1 n/a
6 TRCN0000011366 CGGGATACCATGATGAGTCTT pLKO.1 1106 CDS 100% 4.950 6.930 N LPAR1 n/a
7 TRCN0000369245 GTTCAACACAGGACCCAATAC pLKO_005 676 CDS 100% 10.800 8.640 N LPAR1 n/a
8 TRCN0000364542 AGGATACGTTTCACTTAATAA pLKO_005 1853 3UTR 100% 15.000 10.500 N LPAR1 n/a
9 TRCN0000221123 CCTATTGGTCATGGTGGCAAT pLKO.1 559 CDS 100% 4.050 2.835 N LPAR1 n/a
10 TRCN0000221124 GCCTATGAGAAATTCTTCCTT pLKO.1 1229 CDS 100% 3.000 2.100 N LPAR1 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001351405.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00477 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_00477 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000489150 CGCTATTTTGTTTTATTATAACAC pLX_317 37.3% 99.9% 100% V5 (not translated due to prior stop codon) 204A>G n/a
4 TRCN0000488237 CAATGTATCCTACCGGCAATACTT pLX_317 27.6% 99.8% 99.7% V5 204A>G;1092_1093insG n/a
5 ccsbBroadEn_10795 pDONR223 100% 95% 95% None 1_54del n/a
6 ccsbBroad304_10795 pLX_304 0% 95% 95% V5 1_54del n/a
Download CSV