Transcript: Human XM_017002060.2

PREDICTED: Homo sapiens COP1 E3 ubiquitin ligase (COP1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
COP1 (64326)
Length:
8869
CDS:
2110..4425

Additional Resources:

NCBI RefSeq record:
XM_017002060.2
NBCI Gene record:
COP1 (64326)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017002060.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000029720 CCTTGGTATAATAGCACGTTA pLKO.1 3190 CDS 100% 4.950 6.930 N COP1 n/a
2 TRCN0000343444 CCTTGGTATAATAGCACGTTA pLKO_005 3190 CDS 100% 4.950 6.930 N COP1 n/a
3 TRCN0000041086 GCTGTATCAGTTGGAGTAGTT pLKO.1 3572 CDS 100% 4.950 3.960 N Rfwd2 n/a
4 TRCN0000363790 GCTGTATCAGTTGGAGTAGTT pLKO_005 3572 CDS 100% 4.950 3.960 N Rfwd2 n/a
5 TRCN0000235227 CAGAGTTTGGAGGACAATAAT pLKO_005 2593 CDS 100% 15.000 10.500 N EG667784 n/a
6 TRCN0000029722 GCAGCCCAACTACAGATTCTT pLKO.1 2869 CDS 100% 5.625 3.938 N COP1 n/a
7 TRCN0000029723 GCTGGAGTTACAAAGAAGATT pLKO.1 3466 CDS 100% 5.625 3.938 N COP1 n/a
8 TRCN0000343445 GCTGGAGTTACAAAGAAGATT pLKO_005 3466 CDS 100% 5.625 3.938 N COP1 n/a
9 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 8215 3UTR 100% 4.950 2.475 Y CFLAR n/a
10 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 8215 3UTR 100% 4.950 2.475 Y C19orf31 n/a
11 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 8213 3UTR 100% 4.950 2.475 Y ERN2 n/a
12 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 8213 3UTR 100% 4.950 2.475 Y P3H4 n/a
13 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 8213 3UTR 100% 4.950 2.475 Y P3H4 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017002060.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03940 pDONR223 100% 92.4% 91.7% None (many diffs) n/a
2 ccsbBroad304_03940 pLX_304 0% 92.4% 91.7% V5 (many diffs) n/a
3 TRCN0000477822 GATACAACGGCCTAGATGTACCAA pLX_317 18.3% 92.4% 91.7% V5 (many diffs) n/a
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