Construct: ORF ccsbBroadEn_03940

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011557.1_s300c1, BRDN0000457077
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
COP1 (64326)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64326 COP1 COP1 E3 ubiquitin ligase NM_022457.7 100% 100%
2 human 64326 COP1 COP1 E3 ubiquitin ligase XM_005245447.3 99.4% 99.4% 630_631insGTGAGTAGCACC
3 human 64326 COP1 COP1 E3 ubiquitin ligase XM_011509881.2 97.5% 97.5% 969_1022del
4 human 64326 COP1 COP1 E3 ubiquitin ligase XM_005245448.3 97.2% 97.2% 831_832ins60
5 human 64326 COP1 COP1 E3 ubiquitin ligase XM_006711487.3 96.8% 96.8% 762_763ins69
6 human 64326 COP1 COP1 E3 ubiquitin ligase NM_001001740.3 96.7% 96.7% 630_631insGTGAGTAGCACC;819_820ins60
7 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002061.2 95.1% 94.4% (many diffs)
8 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002063.2 94.6% 93.9% (many diffs)
9 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002059.2 92.9% 92.2% (many diffs)
10 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002065.2 92.5% 91.8% (many diffs)
11 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002060.2 92.4% 91.7% (many diffs)
12 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002066.2 92.1% 91.4% (many diffs)
13 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002067.2 92% 91.3% (many diffs)
14 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002062.2 90.4% 89.7% (many diffs)
15 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002064.2 90% 89.3% (many diffs)
16 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002069.2 76.2% 73.7% (many diffs)
17 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002076.1 67.1% 67.1% 0_1ins720
18 human 64326 COP1 COP1 E3 ubiquitin ligase NM_001286644.1 67.1% 65.5% 0_1ins523;42_43ins197
19 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002070.1 62.1% 61.3% (many diffs)
20 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002071.1 62.1% 59.8% (many diffs)
21 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002075.1 60.9% 58.6% (many diffs)
22 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002072.1 60.9% 59.8% (many diffs)
23 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002073.1 59.5% 57.2% (many diffs)
24 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002074.1 58.3% 57.2% (many diffs)
25 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002078.1 55.4% 52.4% (many diffs)
26 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002079.1 55.4% 52.4% (many diffs)
27 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002080.2 55.4% 52.4% (many diffs)
28 human 64326 COP1 COP1 E3 ubiquitin ligase XM_017002077.2 54.6% 53.9% (many diffs)
29 mouse 26374 Rfwd2 ring finger and WD repeat d... NM_011931.3 92.4% 97.5% (many diffs)
30 mouse 26374 Rfwd2 ring finger and WD repeat d... XM_006496859.2 91.9% 96.9% (many diffs)
31 mouse 26374 Rfwd2 ring finger and WD repeat d... XM_006496860.2 62.6% 66.7% (many diffs)
32 mouse 26374 Rfwd2 ring finger and WD repeat d... XM_006496861.2 55.1% 58.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2262
ORF length:
2193
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCTGGTAGC CGCCAGGCCG GGTCGGGCTC CGCTGGGACA AGCCCCGGGT
121CCTCGGCGGC CTCCTCGGTG ACTTCCGCCT CCTCGTCTTT ATCCTCTTCC CCGTCGCCGC
181CTTCCGTGGC GGTTTCGGCG GCAGCGCTGG TGTCCGGCGG GGTGGCCCAG GCCGCCGGCT
241CGGGCGGCCT CGGGGGCCCG GTGCGGCCTG TGTTGGTGGC GCCCGCCGTA TCGGGTAGCG
301GCGGCGGGGC GGTGTCCACG GGCCTGTCCC GGCACAGCTG CGCGGCCAGG CCCAGCGCCG
361GCGTAGGAGG CAGCAGCTCC AGCCTAGGCA GCGGCAGCAG GAAGCGACCT CTCCTCGCCC
421CCCTCTGCAA CGGGCTCATC AACTCCTACG AGGACAAAAG CAACGACTTC GTATGCCCCA
481TCTGCTTTGA TATGATTGAA GAAGCATACA TGACAAAATG TGGCCACAGC TTTTGCTACA
541AGTGTATTCA TCAGAGTTTG GAGGACAATA ATAGATGTCC CAAGTGTAAC TATGTTGTGG
601ACAATATTGA CCATCTGTAT CCTAATTTCT TGGTGAATGA ACTCATTCTT AAACAGAAGC
661AAAGATTTGA GGAAAAGAGG TTCAAATTGG ACCACTCAGT GAGTAGCACC AATGGCCACA
721GGTGGCAGAT ATTTCAAGAT TGGTTGGGAA CTGACCAAGA TAACCTTGAT TTGGCCAATG
781TCAATCTTAT GTTGGAGTTA CTAGTGCAGA AGAAGAAACA ACTGGAAGCA GAATCACATG
841CAGCCCAACT ACAGATTCTT ATGGAATTCC TCAAGGTTGC AAGAAGAAAT AAGAGAGAGC
901AACTGGAACA GATCCAGAAG GAGCTAAGTG TTTTGGAAGA GGATATTAAG AGAGTGGAAG
961AAATGAGTGG CTTATACTCT CCTGTCAGTG AGGATAGCAC AGTGCCTCAA TTTGAAGCTC
1021CTTCTCCATC ACACAGTAGT ATTATTGATT CCACAGAATA CAGCCAACCT CCAGGTTTCA
1081GTGGCAGTTC TCAGACAAAG AAACAGCCTT GGTATAATAG CACGTTAGCA TCAAGACGAA
1141AACGACTTAC TGCTCATTTT GAAGACTTGG AGCAGTGTTA CTTTTCTACA AGGATGTCTC
1201GTATCTCAGA TGACAGTCGA ACTGCAAGCC AGTTGGATGA ATTTCAGGAA TGCTTGTCCA
1261AGTTTACTCG ATATAATTCA GTACGACCTT TAGCCACATT GTCATATGCT AGTGATCTCT
1321ATAATGGTTC CAGTATAGTC TCTAGTATTG AATTTGACCG GGATTGTGAC TATTTTGCGA
1381TTGCTGGAGT TACAAAGAAG ATTAAAGTCT ATGAATATGA CACTGTCATC CAGGATGCAG
1441TGGATATTCA TTACCCTGAG AATGAAATGA CCTGCAATTC GAAAATCAGC TGTATCAGTT
1501GGAGTAGTTA CCATAAGAAC CTGTTAGCTA GCAGTGATTA TGAAGGCACT GTTATTTTAT
1561GGGATGGATT CACAGGACAG AGGTCAAAGG TCTATCAGGA GCATGAGAAG AGGTGTTGGA
1621GTGTTGACTT TAATTTGATG GATCCTAAAC TCTTGGCTTC AGGTTCTGAT GATGCAAAAG
1681TGAAGCTGTG GTCTACCAAT CTAGACAACT CAGTGGCAAG CATTGAGGCA AAGGCTAATG
1741TGTGCTGTGT TAAATTCAGC CCCTCTTCCA GATACCATTT GGCTTTCGGC TGTGCAGATC
1801ACTGTGTCCA CTACTATGAT CTTCGTAACA CTAAACAGCC AATCATGGTA TTCAAAGGAC
1861ACCGTAAAGC AGTCTCTTAT GCAAAGTTTG TGAGTGGTGA GGAAATTGTC TCTGCCTCAA
1921CAGACAGTCA GCTAAAACTG TGGAATGTAG GGAAACCATA CTGCCTACGT TCCTTCAAGG
1981GTCATATCAA TGAAAAAAAC TTTGTAGGCC TGGCTTCCAA TGGAGATTAT ATAGCTTGTG
2041GAAGTGAAAA TAACTCTCTC TACCTGTACT ATAAAGGACT TTCTAAGACT TTGCTAACTT
2101TTAAGTTTGA TACAGTCAAA AGTGTTCTCG ACAAAGACCG AAAAGAAGAT GATACAAATG
2161AATTTGTTAG TGCTGTGTGC TGGAGGGCAC TACCAGATGG GGAGTCCAAT GTGCTGATTG
2221CTGCTAACAG TCAGGGTACA ATTAAGGTGC TAGAATTGGT ATTGCCAACT TTCTTGTACA
2281AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)