Construct: ORF ccsbBroadEn_03940
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011557.1_s300c1, BRDN0000457077
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COP1 (64326)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | NM_022457.7 | 100% | 100% | |
| 2 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_005245447.3 | 99.4% | 99.4% | 630_631insGTGAGTAGCACC |
| 3 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_011509881.2 | 97.5% | 97.5% | 969_1022del |
| 4 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_005245448.3 | 97.2% | 97.2% | 831_832ins60 |
| 5 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_006711487.3 | 96.8% | 96.8% | 762_763ins69 |
| 6 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | NM_001001740.3 | 96.7% | 96.7% | 630_631insGTGAGTAGCACC;819_820ins60 |
| 7 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002061.2 | 95.1% | 94.4% | (many diffs) |
| 8 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002063.2 | 94.6% | 93.9% | (many diffs) |
| 9 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002059.2 | 92.9% | 92.2% | (many diffs) |
| 10 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002065.2 | 92.5% | 91.8% | (many diffs) |
| 11 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002060.2 | 92.4% | 91.7% | (many diffs) |
| 12 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002066.2 | 92.1% | 91.4% | (many diffs) |
| 13 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002067.2 | 92% | 91.3% | (many diffs) |
| 14 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002062.2 | 90.4% | 89.7% | (many diffs) |
| 15 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002064.2 | 90% | 89.3% | (many diffs) |
| 16 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002069.2 | 76.2% | 73.7% | (many diffs) |
| 17 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002076.1 | 67.1% | 67.1% | 0_1ins720 |
| 18 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | NM_001286644.1 | 67.1% | 65.5% | 0_1ins523;42_43ins197 |
| 19 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002070.1 | 62.1% | 61.3% | (many diffs) |
| 20 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002071.1 | 62.1% | 59.8% | (many diffs) |
| 21 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002075.1 | 60.9% | 58.6% | (many diffs) |
| 22 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002072.1 | 60.9% | 59.8% | (many diffs) |
| 23 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002073.1 | 59.5% | 57.2% | (many diffs) |
| 24 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002074.1 | 58.3% | 57.2% | (many diffs) |
| 25 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002078.1 | 55.4% | 52.4% | (many diffs) |
| 26 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002079.1 | 55.4% | 52.4% | (many diffs) |
| 27 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002080.2 | 55.4% | 52.4% | (many diffs) |
| 28 | human | 64326 | COP1 | COP1 E3 ubiquitin ligase | XM_017002077.2 | 54.6% | 53.9% | (many diffs) |
| 29 | mouse | 26374 | Rfwd2 | ring finger and WD repeat d... | NM_011931.3 | 92.4% | 97.5% | (many diffs) |
| 30 | mouse | 26374 | Rfwd2 | ring finger and WD repeat d... | XM_006496859.2 | 91.9% | 96.9% | (many diffs) |
| 31 | mouse | 26374 | Rfwd2 | ring finger and WD repeat d... | XM_006496860.2 | 62.6% | 66.7% | (many diffs) |
| 32 | mouse | 26374 | Rfwd2 | ring finger and WD repeat d... | XM_006496861.2 | 55.1% | 58.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2262
- ORF length:
- 2193
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCTGGTAGC CGCCAGGCCG GGTCGGGCTC CGCTGGGACA AGCCCCGGGT 121 CCTCGGCGGC CTCCTCGGTG ACTTCCGCCT CCTCGTCTTT ATCCTCTTCC CCGTCGCCGC 181 CTTCCGTGGC GGTTTCGGCG GCAGCGCTGG TGTCCGGCGG GGTGGCCCAG GCCGCCGGCT 241 CGGGCGGCCT CGGGGGCCCG GTGCGGCCTG TGTTGGTGGC GCCCGCCGTA TCGGGTAGCG 301 GCGGCGGGGC GGTGTCCACG GGCCTGTCCC GGCACAGCTG CGCGGCCAGG CCCAGCGCCG 361 GCGTAGGAGG CAGCAGCTCC AGCCTAGGCA GCGGCAGCAG GAAGCGACCT CTCCTCGCCC 421 CCCTCTGCAA CGGGCTCATC AACTCCTACG AGGACAAAAG CAACGACTTC GTATGCCCCA 481 TCTGCTTTGA TATGATTGAA GAAGCATACA TGACAAAATG TGGCCACAGC TTTTGCTACA 541 AGTGTATTCA TCAGAGTTTG GAGGACAATA ATAGATGTCC CAAGTGTAAC TATGTTGTGG 601 ACAATATTGA CCATCTGTAT CCTAATTTCT TGGTGAATGA ACTCATTCTT AAACAGAAGC 661 AAAGATTTGA GGAAAAGAGG TTCAAATTGG ACCACTCAGT GAGTAGCACC AATGGCCACA 721 GGTGGCAGAT ATTTCAAGAT TGGTTGGGAA CTGACCAAGA TAACCTTGAT TTGGCCAATG 781 TCAATCTTAT GTTGGAGTTA CTAGTGCAGA AGAAGAAACA ACTGGAAGCA GAATCACATG 841 CAGCCCAACT ACAGATTCTT ATGGAATTCC TCAAGGTTGC AAGAAGAAAT AAGAGAGAGC 901 AACTGGAACA GATCCAGAAG GAGCTAAGTG TTTTGGAAGA GGATATTAAG AGAGTGGAAG 961 AAATGAGTGG CTTATACTCT CCTGTCAGTG AGGATAGCAC AGTGCCTCAA TTTGAAGCTC 1021 CTTCTCCATC ACACAGTAGT ATTATTGATT CCACAGAATA CAGCCAACCT CCAGGTTTCA 1081 GTGGCAGTTC TCAGACAAAG AAACAGCCTT GGTATAATAG CACGTTAGCA TCAAGACGAA 1141 AACGACTTAC TGCTCATTTT GAAGACTTGG AGCAGTGTTA CTTTTCTACA AGGATGTCTC 1201 GTATCTCAGA TGACAGTCGA ACTGCAAGCC AGTTGGATGA ATTTCAGGAA TGCTTGTCCA 1261 AGTTTACTCG ATATAATTCA GTACGACCTT TAGCCACATT GTCATATGCT AGTGATCTCT 1321 ATAATGGTTC CAGTATAGTC TCTAGTATTG AATTTGACCG GGATTGTGAC TATTTTGCGA 1381 TTGCTGGAGT TACAAAGAAG ATTAAAGTCT ATGAATATGA CACTGTCATC CAGGATGCAG 1441 TGGATATTCA TTACCCTGAG AATGAAATGA CCTGCAATTC GAAAATCAGC TGTATCAGTT 1501 GGAGTAGTTA CCATAAGAAC CTGTTAGCTA GCAGTGATTA TGAAGGCACT GTTATTTTAT 1561 GGGATGGATT CACAGGACAG AGGTCAAAGG TCTATCAGGA GCATGAGAAG AGGTGTTGGA 1621 GTGTTGACTT TAATTTGATG GATCCTAAAC TCTTGGCTTC AGGTTCTGAT GATGCAAAAG 1681 TGAAGCTGTG GTCTACCAAT CTAGACAACT CAGTGGCAAG CATTGAGGCA AAGGCTAATG 1741 TGTGCTGTGT TAAATTCAGC CCCTCTTCCA GATACCATTT GGCTTTCGGC TGTGCAGATC 1801 ACTGTGTCCA CTACTATGAT CTTCGTAACA CTAAACAGCC AATCATGGTA TTCAAAGGAC 1861 ACCGTAAAGC AGTCTCTTAT GCAAAGTTTG TGAGTGGTGA GGAAATTGTC TCTGCCTCAA 1921 CAGACAGTCA GCTAAAACTG TGGAATGTAG GGAAACCATA CTGCCTACGT TCCTTCAAGG 1981 GTCATATCAA TGAAAAAAAC TTTGTAGGCC TGGCTTCCAA TGGAGATTAT ATAGCTTGTG 2041 GAAGTGAAAA TAACTCTCTC TACCTGTACT ATAAAGGACT TTCTAAGACT TTGCTAACTT 2101 TTAAGTTTGA TACAGTCAAA AGTGTTCTCG ACAAAGACCG AAAAGAAGAT GATACAAATG 2161 AATTTGTTAG TGCTGTGTGC TGGAGGGCAC TACCAGATGG GGAGTCCAAT GTGCTGATTG 2221 CTGCTAACAG TCAGGGTACA ATTAAGGTGC TAGAATTGGT ATTGCCAACT TTCTTGTACA 2281 AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac