Transcript: Human XM_011536192.2

PREDICTED: Homo sapiens reticulon 4 interacting protein 1 (RTN4IP1), transcript variant X3, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
RTN4IP1 (84816)
Length:
1777
CDS:
806..1756

Additional Resources:

NCBI RefSeq record:
XM_011536192.2
NBCI Gene record:
RTN4IP1 (84816)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_011536192.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000157614 GTCCATTATCGCTGGGCATTT pLKO.1 1571 CDS 100% 10.800 15.120 N RTN4IP1 n/a
2 TRCN0000153906 CAAGGCACTCTTTCAGAGTTT pLKO.1 1019 CDS 100% 4.950 3.960 N RTN4IP1 n/a
3 TRCN0000153879 CGTGATCCTTTACACGTGAAA pLKO.1 872 CDS 100% 4.950 3.960 N RTN4IP1 n/a
4 TRCN0000152484 CAGGTAATGAAAGCATGGGAT pLKO.1 1232 CDS 100% 2.640 1.848 N RTN4IP1 n/a
5 TRCN0000157615 GACATTGCAGAACTGGTGGAT pLKO.1 1619 CDS 100% 2.640 1.848 N RTN4IP1 n/a
6 TRCN0000152895 GTGTTCTAATCTTAGGCGCTT pLKO.1 1185 CDS 100% 2.160 1.512 N RTN4IP1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011536192.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12859 pDONR223 100% 88.4% 86.4% None (many diffs) n/a
2 ccsbBroad304_12859 pLX_304 0% 88.4% 86.4% V5 (many diffs) n/a
3 TRCN0000472523 CGATTTAGGCAGATTCCTTAACCA pLX_317 35.9% 88.4% 86.4% V5 (many diffs) n/a
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