Transcript: Human XM_017005685.1

PREDICTED: Homo sapiens C-C motif chemokine receptor 3 (CCR3), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
CCR3 (1232)
Length:
2609
CDS:
994..2226

Additional Resources:

NCBI RefSeq record:
XM_017005685.1
NBCI Gene record:
CCR3 (1232)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017005685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000378237 ATACAGGAGGCTCCGAATTAT pLKO_005 1341 CDS 100% 15.000 21.000 N CCR3 n/a
2 TRCN0000008190 GCTCCGAATTATGACCAACAT pLKO.1 1350 CDS 100% 4.950 6.930 N CCR3 n/a
3 TRCN0000008189 CGTACTCATCATCAACCCTAA pLKO.1 2427 3UTR 100% 4.050 5.670 N CCR3 n/a
4 TRCN0000356809 CCCAGAGGATACAGTATATAG pLKO_005 1719 CDS 100% 13.200 10.560 N CCR3 n/a
5 TRCN0000008191 GCCGGAACTCTCTATTGTGTT pLKO.1 2202 CDS 100% 4.950 3.960 N CCR3 n/a
6 TRCN0000356810 TAGCAGCTCTTCCTGAATTTA pLKO_005 1646 CDS 100% 15.000 10.500 N CCR3 n/a
7 TRCN0000356808 CCTTCTCTCTTCCTATCAATC pLKO_005 1935 CDS 100% 10.800 7.560 N CCR3 n/a
8 TRCN0000008193 CCCTACAATGTGGCTATCCTT pLKO.1 1918 CDS 100% 3.000 2.100 N CCR3 n/a
9 TRCN0000008192 CCACACTCTGAGAATGACCAT pLKO.1 1752 CDS 100% 2.640 1.848 N CCR3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017005685.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00332 pDONR223 100% 86.5% 86.5% None 1_165del n/a
2 ccsbBroad304_00332 pLX_304 0% 86.5% 86.5% V5 1_165del n/a
3 TRCN0000479563 CGAGCGACGGGGTCGCACTCCCCT pLX_317 31.5% 86.5% 86.5% V5 1_165del n/a
4 TRCN0000491439 CGACCAGAAATTGTACTAACTCGG pLX_317 33.8% 86.5% 86.5% V5 (not translated due to prior stop codon) 1_165del n/a
5 TRCN0000488468 GTGGCCCTGTAGATGCAACCCCTG pLX_317 28.7% 86.5% 86.3% V5 1_165del;1230_1231insG n/a
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