Transcript: Human XM_017027235.1

PREDICTED: Homo sapiens zinc finger protein 91 (ZNF91), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ZNF91 (7644)
Length:
4626
CDS:
284..3736

Additional Resources:

NCBI RefSeq record:
XM_017027235.1
NBCI Gene record:
ZNF91 (7644)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017027235.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000431137 TAGGAAATCTTCAACTCTTAC pLKO_005 3085 CDS 100% 10.800 8.640 N ZNF91 n/a
2 TRCN0000435183 GCGTTTATATTACAGAGAAGT pLKO_005 765 CDS 100% 4.950 3.960 N ZNF91 n/a
3 TRCN0000454945 AGACAATCCTTAACCCTTAAT pLKO_005 1742 CDS 100% 13.200 9.240 N ZNF91 n/a
4 TRCN0000431335 CTCAAGTCTTTCTACACATAA pLKO_005 1918 CDS 100% 13.200 9.240 N ZNF91 n/a
5 TRCN0000417830 CGTTCTTCAACCCTTGCTAAA pLKO_005 1157 CDS 100% 10.800 7.560 N ZNF91 n/a
6 TRCN0000420667 GCCAGACCTGATTACTTATCT pLKO_005 334 CDS 100% 5.625 3.938 N ZNF91 n/a
7 TRCN0000015437 CCATTCTTCAGCCCTTGCTAA pLKO.1 2080 CDS 100% 4.950 3.465 N ZNF91 n/a
8 TRCN0000015435 GCCATTCTTCAACCCTTGCTA pLKO.1 1071 CDS 100% 3.000 2.100 N ZNF91 n/a
9 TRCN0000015434 CCCAACATAAATGCGTTTATA pLKO.1 753 CDS 100% 1.500 1.050 N ZNF91 n/a
10 TRCN0000425450 AGCGACTCTCAACCCTTACTA pLKO_005 1323 CDS 100% 5.625 3.375 N ZNF91 n/a
11 TRCN0000015436 GCAAAGCATTTAGCCAGCCTT pLKO.1 2907 CDS 100% 2.640 1.584 N ZNF91 n/a
12 TRCN0000427608 GTGCACAAAGAAGGTTATAAT pLKO_005 560 CDS 100% 15.000 7.500 Y ZNF431 n/a
13 TRCN0000236730 CCCTTACTACACATAAGATAA pLKO_005 3015 CDS 100% 13.200 6.600 Y ZNF98 n/a
14 TRCN0000225755 CCGGAGAGAAACCCTACAAAT pLKO_005 3462 CDS 100% 13.200 6.600 Y Zfp808 n/a
15 TRCN0000428574 CTGAAGAGAAACCCTACAAAT pLKO_005 1278 CDS 100% 13.200 6.600 Y ZNF138 n/a
16 TRCN0000096537 CTGGAGAGAAACCCTACAAAT pLKO.1 1026 CDS 100% 13.200 6.600 Y Zfp934 n/a
17 TRCN0000235358 CTGGAGAGAAACCCTACAAAT pLKO_005 1026 CDS 100% 13.200 6.600 Y 2810408B13Rik n/a
18 TRCN0000244342 CTGGAGAGAAACCCTACAAAT pLKO_005 1026 CDS 100% 13.200 6.600 Y EG668616 n/a
19 TRCN0000018187 CCCAGAGCAAAGTATTTCAAT pLKO.1 606 CDS 100% 5.625 2.813 Y ZNF90 n/a
20 TRCN0000016346 CACTGGAGAGAAACCCTACAA pLKO.1 1024 CDS 100% 4.950 2.475 Y ZNF254 n/a
21 TRCN0000018502 GATGTTAGAGAACTACAGAAA pLKO.1 283 5UTR 100% 4.950 2.475 Y ZNF493 n/a
22 TRCN0000149073 GCAAAGCCTTTAACCAGTCTT pLKO.1 3579 CDS 100% 4.950 2.475 Y ZNF714 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017027235.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02188 pDONR223 100% 45.8% 40.6% None (many diffs) n/a
2 ccsbBroad304_02188 pLX_304 0% 45.8% 40.6% V5 (many diffs) n/a
3 TRCN0000476436 TCCGTGTTGGTCAAGCGACGCGCC pLX_317 12.5% 45.8% 40.6% V5 (many diffs) n/a
4 ccsbBroadEn_15167 pDONR223 53.6% 35.2% 13.7% None (many diffs) n/a
5 ccsbBroad304_15167 pLX_304 0% 35.2% 13.7% V5 (not translated due to prior stop codon) (many diffs) n/a
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