Transcript: Mouse XM_017316702.1

PREDICTED: Mus musculus ryanodine receptor 3 (Ryr3), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Ryr3 (20192)
Length:
15961
CDS:
529..15201

Additional Resources:

NCBI RefSeq record:
XM_017316702.1
NBCI Gene record:
Ryr3 (20192)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017316702.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000452690 GAATTGCATTGATCGATTAAA pLKO_005 2019 CDS 100% 15.000 21.000 N Ryr3 n/a
2 TRCN0000451135 TCGACATGAAGTACCATATTT pLKO_005 14399 CDS 100% 15.000 21.000 N Ryr3 n/a
3 TRCN0000102884 CTGTGGTTGTTTACCTCTATA pLKO.1 14621 CDS 100% 13.200 18.480 N Ryr3 n/a
4 TRCN0000068319 GCCCTCGTATTGAATTGCATT pLKO.1 2008 CDS 100% 4.950 6.930 N LOC381424 n/a
5 TRCN0000102881 CGCTGGTAGAATCATCCACTA pLKO.1 12281 CDS 100% 4.050 5.670 N Ryr3 n/a
6 TRCN0000053350 CGGGTCCATGAAAGTGTGAAA pLKO.1 4738 CDS 100% 4.950 3.960 N RYR3 n/a
7 TRCN0000102882 GCGATGGTGTTCTTTGTTCTT pLKO.1 13966 CDS 100% 4.950 3.960 N Ryr3 n/a
8 TRCN0000068320 GCAGGTTTCATGCTACCACAT pLKO.1 9669 CDS 100% 4.050 3.240 N LOC381424 n/a
9 TRCN0000068322 CCGAGCATCAAAGGAAATCAA pLKO.1 1521 CDS 100% 5.625 3.938 N LOC381424 n/a
10 TRCN0000102880 CCGACATGGTTCAGAGAGAAA pLKO.1 15394 3UTR 100% 4.950 3.465 N Ryr3 n/a
11 TRCN0000068321 GCAGCCATATTTAAGAGTGAA pLKO.1 5023 CDS 100% 4.950 3.465 N LOC381424 n/a
12 TRCN0000068318 GCGGTAAATATGAACCGAGAT pLKO.1 4285 CDS 100% 4.050 2.835 N LOC381424 n/a
13 TRCN0000102883 GCGCATTTCTTTGAAGAGAAA pLKO.1 11149 CDS 100% 0.495 0.347 N Ryr3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017316702.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.