Construct: ORF TRCN0000469635
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002323.1_s317c1
- Derived from:
- BRDN0000394021
- DNA Barcode:
- CTCGCGCCTGGTAACTGACACCCA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC6A13 (6540)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000469635
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | NM_016615.5 | 99.6% | 99.5% | 21_22delCAinsAG;1014_1016delCATinsAGG;1720C>T |
| 2 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | NM_001190997.2 | 84.3% | 84.2% | (many diffs) |
| 3 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_011521012.2 | 80% | 79.9% | 0_1ins357;657_659delCATinsAGG;1363C>T |
| 4 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XR_002957372.1 | 79.6% | (many diffs) | |
| 5 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XR_001748849.1 | 74.6% | (many diffs) | |
| 6 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_011521013.1 | 72.8% | 72.7% | 0_1ins486;528_530delCATinsAGG;1234C>T |
| 7 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_017019844.1 | 65.1% | 64.4% | (many diffs) |
| 8 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_017019842.1 | 61.6% | 50.5% | (many diffs) |
| 9 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_006719008.3 | 59.4% | 59.3% | 0_1ins729;285_287delCATinsAGG;991C>T |
| 10 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_017019845.1 | 59.4% | 59.3% | 0_1ins729;285_287delCATinsAGG;991C>T |
| 11 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_017019846.1 | 53% | 51.9% | (many diffs) |
| 12 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | XM_017019847.1 | 53% | 51.9% | (many diffs) |
| 13 | human | 6540 | SLC6A13 | solute carrier family 6 mem... | NM_001243392.2 | 13.7% | 11.6% | (many diffs) |
| 14 | mouse | 14412 | Slc6a13 | solute carrier family 6 (ne... | NM_144512.2 | 87.9% | 90.5% | (many diffs) |
| 15 | mouse | 14412 | Slc6a13 | solute carrier family 6 (ne... | XM_006505537.3 | 86.3% | 88.9% | (many diffs) |
| 16 | mouse | 14412 | Slc6a13 | solute carrier family 6 (ne... | XM_006505538.3 | 81.9% | 76.6% | (many diffs) |
| 17 | mouse | 14412 | Slc6a13 | solute carrier family 6 (ne... | XM_011241211.2 | 46.4% | 49% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1872
- ORF length:
- 1806
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga tagcagggtc tcaggagcaa ccagtaatgg agagacaaaa ccagtgtatc 121 cagtcatgga aaagaaggag gaagatggca ccctggagcg ggggcactgg aacaacaaga 181 tggagtttgt gctgtcagtg gctggggaga tcattggctt aggcaacgtc tggaggtttc 241 cctatctctg ctacaaaaat gggggaggtg ccttcttcat cccctacctc gtcttcctct 301 ttacctgtgg cattcctgtc ttccttctgg agacagcact aggccagtac actagccagg 361 gaggcgtcac agcctggagg aagatctgcc ccatctttga gggcattggc tatgcctccc 421 agatgatcgt catcctcctc aacgtctact acatcattgt gttggcctgg gccctgttct 481 acctcttcag cagcttcacc atcgacctgc cctggggcgg ctgctaccat gagtggaaca 541 cagaacactg tatggagttc cagaagacca acggctccct gaatggtacc tctgagaatg 601 ccacctctcc tgtcatcgag ttctgggagc ggcgggtctt gaagatctct gatgggatcc 661 agcacctggg ggccctgcgc tgggagctgg ctctgtgcct cctgctggcc tgggtcatct 721 gctacttctg catctggaag ggggtgaagt ccacaggcaa ggtggtgtac ttcacggcca 781 catttcctta cctcatgctg gtggtcctgt taattcgagg ggtgacgttg cctggggcag 841 cccaaggaat tcagttttac ctgtacccaa acctcacgcg tctgtgggat ccccaggtgt 901 ggatggatgc aggcacccag atattcttct ccttcgccat ctgtcttggg tgcctgacag 961 ccctgggcag ctacaacaag taccacaaca actgctacag ggactgcatc gccctctgct 1021 tcctcaacag cggcaccagc tttgtggccg gctttgccat cttctccatc ctgggcttag 1081 ggtctcagga gcagggggtg cccatttctg aggtggccga gtcaggccct ggcctggctt 1141 tcatcgctta cccgcgggct gtggtgatgc tgcccttctc tcctctctgg gcctgctgtt 1201 tcttcttcat ggtcgttctc ctgggactgg atagccagtt tgtgtgtgta gaaagcctgg 1261 tgacagcgct ggtggacatg taccctcacg tgttccgcaa gaagaaccgg agggaagtcc 1321 tcatccttgg agtatctgtc gtctccttcc ttgtggggct gatcatgctc acagagggcg 1381 gaatgtacgt gttccagctc tttgactact atgcggccag tggcatgtgc ctcctgttcg 1441 tggccatctt cgagtccctc tgtgtggctt GGGTTTACGG AGCCAAGCGC TTCTACGACA 1501 ACATCGAAGA CATGATTGGG TACAGGCCAT GGCCTCTTAT CAAATACTGT TGGCTCTTCC 1561 TCACACCAGC TGTGTGCACA GCCACCTTTC TCTTCTCCCT GATAAAGTAC ACTCCGCTGA 1621 CCTACAACAA GAAGTACACG TACCCGTGGT GGGGCGATGC CCTGGGCTGG CTCCTGGCTC 1681 TGTCCTCCAT GGTCTGCATT CCTGCCTGGA GCCTCTACAG ACTCGGAACC CTCAAGGGCC 1741 CCTTCAGAGA GAGAATCCGT CAGCTCATGT GCCCAGCCGA GGACTTGCCC CAGCGGAACC 1801 CAGCAGGACC CTCGGCTCCC GCCACCCCCA GGACCTCACT GCTCAGACTC ACAGAGCTAG 1861 AGTCTCACTG CTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 1921 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 1981 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACTC GCGCCTGGTA ACTGACACCC 2041 AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t