Transcript: Human XR_001755092.1

PREDICTED: Homo sapiens uncharacterized LOC107985485 (LOC107985485), ncRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
LOC107985485 (107985485)
Length:
3486
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001755092.1
NBCI Gene record:
LOC107985485 (107985485)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XR_001755092.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

No results found.

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001755092.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12783 pDONR223 100% 5.3% None (many diffs) n/a
2 ccsbBroad304_12783 pLX_304 0% 5.3% V5 (many diffs) n/a
3 TRCN0000478282 TATCTGCTCCACCGGGCTCCGTTG pLX_317 100% 5.3% V5 (many diffs) n/a
4 ccsbBroadEn_11616 pDONR223 100% 4.9% None (many diffs) n/a
5 ccsbBroad304_11616 pLX_304 0% 4.9% V5 (many diffs) n/a
6 TRCN0000467678 CCTCCCCTCACACCTCGTCAAAAC pLX_317 100% 4.9% V5 (many diffs) n/a
7 ccsbBroadEn_15487 pDONR223 0% 4.6% None (many diffs) n/a
8 ccsbBroad304_15487 pLX_304 0% 4.6% V5 (many diffs) n/a
9 TRCN0000473708 TAGCATCGTTGCACGCGCACGTTG pLX_317 100% 4.6% V5 (many diffs) n/a
10 ccsbBroadEn_10261 pDONR223 100% 1.8% None (many diffs) n/a
11 ccsbBroad304_10261 pLX_304 0% 1.8% V5 (many diffs) n/a
12 TRCN0000492083 TTATAGGCCCAGAGCACTACCAAC pLX_317 100% 1.8% V5 (many diffs) n/a
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