Construct: ORF TRCN0000471511
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013782.1_s317c1
- Derived from:
- ccsbBroadEn_00977
- DNA Barcode:
- CTCATGCCCAAAAATTGGGTAACG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MAX (4149)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471511
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4149 | MAX | MYC associated factor X | NM_145114.2 | 100% | 100% | |
| 2 | human | 4149 | MAX | MYC associated factor X | NM_001271068.1 | 90.6% | 90.6% | 36_37ins27 |
| 3 | human | 4149 | MAX | MYC associated factor X | NM_197957.3 | 69.6% | 63% | (many diffs) |
| 4 | human | 4149 | MAX | MYC associated factor X | NM_145113.3 | 69.5% | 57.7% | (many diffs) |
| 5 | human | 4149 | MAX | MYC associated factor X | NM_001271069.1 | 60.9% | 54% | (many diffs) |
| 6 | human | 4149 | MAX | MYC associated factor X | XM_011536773.3 | 51.4% | 39.6% | (many diffs) |
| 7 | human | 4149 | MAX | MYC associated factor X | NM_002382.5 | 45.9% | 37.9% | (many diffs) |
| 8 | human | 4149 | MAX | MYC associated factor X | NM_145112.3 | 40.7% | 32.5% | (many diffs) |
| 9 | human | 4149 | MAX | MYC associated factor X | NR_073138.1 | 30.8% | (many diffs) | |
| 10 | human | 4149 | MAX | MYC associated factor X | XR_943450.3 | 11.9% | (many diffs) | |
| 11 | human | 4149 | MAX | MYC associated factor X | XR_943451.3 | 11.8% | (many diffs) | |
| 12 | human | 4149 | MAX | MYC associated factor X | XR_001750327.2 | 10.9% | (many diffs) | |
| 13 | human | 4149 | MAX | MYC associated factor X | XR_001750326.2 | 10.6% | (many diffs) | |
| 14 | human | 4149 | MAX | MYC associated factor X | XR_002957553.1 | 8.5% | (many diffs) | |
| 15 | mouse | 17187 | Max | Max protein | NM_008558.2 | 48.2% | 37.9% | (many diffs) |
| 16 | mouse | 17187 | Max | Max protein | XR_381483.3 | 11.3% | (many diffs) | |
| 17 | mouse | 17187 | Max | Max protein | XR_872708.2 | 11% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 119
- ORF end:
- 407
- ORF length:
- 288
- Sequence:
-
1 GAGTTTGGAT CTTGGTTCAT TCTCAAGCCT CAGACAGTGG TTCAAAGTTT TTTTCTTCCA 61 TTTCAGGTGT CGTGAGGCTA GCATCGATTG ATCAACAAGT TTGTACAAAA AAGTTGGCAT 121 GAGCGATAAC GATGACATCG AGGTGGAGAG CGACGAAGAG CAACCGAGGT TTCAATCTGC 181 GGCTGACAAA CGGGCTCATC ATAATGCACT GGAACGAAAA CGTAGGGACC ACATCAAAGA 241 CAGCTTTCAC AGTTTGCGGG ACTCAGTCCC ATCACTCCAA GGAGAGAAGC TCTATTTCCT 301 CTTTTGGAAA TTGTGTACTC CTGTCCTTCA TCGTCAAAGT TTGATGCAGA AATGCCACAC 361 CTTCATTTCA AGCTACCAAG TGCACAAGAA AAAAGAATGC AAGATTTACC CAACTTTCTT 421 GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC 481 GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG 541 TGGAAAGGAC GACTCATGCC CAAAAATTGG GTAACGACGC GTTAAGTCga caatcaacct 601 ctggattaca aaatttgtga aagatt