Construct: ORF TRCN0000471939
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014344.1_s317c1
- Derived from:
- ccsbBroadEn_13667
- DNA Barcode:
- ATACCCTTCTTATTCAGAGCAATT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF321P (399669)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000471939
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100529240 | ZNF816-ZNF321P | ZNF816-ZNF321P readthrough | NM_001202473.1 | 10.5% | 4.7% | 1_622del;699_700ins31 |
| 2 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_018260.2 | 6.8% | 4% | (many diffs) |
| 3 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_001172655.1 | 5.9% | 3.5% | (many diffs) |
| 4 | human | 55762 | ZNF701 | zinc finger protein 701 | XM_011527092.1 | 5.9% | 3.5% | (many diffs) |
| 5 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161501.1 | 5% | 2.9% | (many diffs) |
| 6 | human | 399669 | ZNF321P | zinc finger protein 321, ps... | NR_037805.1 | 4.6% | 1_486del;595_2334del | |
| 7 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161499.2 | 4.5% | 2.6% | (many diffs) |
| 8 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161500.1 | 4.5% | 2.6% | (many diffs) |
| 9 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_030972.3 | 4.5% | 2.6% | (many diffs) |
| 10 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289952.1 | 4.2% | 2.6% | (many diffs) |
| 11 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001363550.1 | 3.8% | 2.2% | (many diffs) |
| 12 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_005258909.4 | 3.8% | 2.2% | (many diffs) |
| 13 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451509.1 | 3.8% | 2.2% | (many diffs) |
| 14 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001039886.4 | 3.5% | 2% | (many diffs) |
| 15 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001321424.1 | 3.5% | 2% | (many diffs) |
| 16 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001321425.1 | 3.5% | 2% | (many diffs) |
| 17 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451506.1 | 3.5% | 2% | (many diffs) |
| 18 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451507.1 | 3.5% | 2% | (many diffs) |
| 19 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451508.1 | 3.5% | 2% | (many diffs) |
| 20 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753718.2 | 3.1% | (many diffs) | |
| 21 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753717.2 | 2.6% | (many diffs) | |
| 22 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 2.6% | (many diffs) | |
| 23 | human | 79986 | ZNF702P | zinc finger protein 702, ps... | NR_003578.1 | 2.5% | (many diffs) | |
| 24 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 2.5% | (many diffs) | |
| 25 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_935832.3 | 2.2% | (many diffs) | |
| 26 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_002958314.1 | 2.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 314
- ORF end:
- 422
- ORF length:
- 108
- Sequence:
-
1 GTCGCTTCAT GTGACTCCAC GGAGTACCGG GCGCCGTCCA GGCACCTCGA TTAGTTCTCG 61 AGCTTTTGGA GTACGTCGTC TTTAGGTTGG GGGGAGGGGT TTTATGCGAT GGAGTTTCCC 121 CACACTGAGT GGGTGGAGAC TGAAGTTAGG CCAGCTTGGC ACTTGATGTA ATTCTCCTTG 181 GAATTTGCCC TTTTTGAGTT TGGATCTTGG TTCATTCTCA AGCCTCAGAC AGTGGTTCAA 241 AGTTTTTTTC TTCCATTTCA GGTGTCGTGA GGCTAGCATC GATTGATCAA CAAGTTTGTA 301 CAAAAAAGTT GGCATGGGAA TAATTCCCTC CATTCTTCAT TACCCATACA AAAATTGGGA 361 AGTACACATG AGAGAAAAAT CTTTCCAATG TAATGAGAGT GGCAAATCCT TTAATTATAG 421 CTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT 481 CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG 541 GCTTTATATA TCTTGTGGAA AGGACGAATA CCCTTCTTAT TCAGAGCAAT TACGCGTTAA 601 GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t