Construct: ORF ccsbBroadEn_13667
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014344.1_s300c1, BRDN0000397129
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF321P (399669)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100529240 | ZNF816-ZNF321P | ZNF816-ZNF321P readthrough | NM_001202473.1 | 10.5% | 4.7% | 1_622del;699_700ins31 |
| 2 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_018260.2 | 6.8% | 4% | (many diffs) |
| 3 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_001172655.1 | 5.9% | 3.5% | (many diffs) |
| 4 | human | 55762 | ZNF701 | zinc finger protein 701 | XM_011527092.1 | 5.9% | 3.5% | (many diffs) |
| 5 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161501.1 | 5% | 2.9% | (many diffs) |
| 6 | human | 399669 | ZNF321P | zinc finger protein 321, ps... | NR_037805.1 | 4.6% | 1_486del;595_2334del | |
| 7 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161499.2 | 4.5% | 2.6% | (many diffs) |
| 8 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161500.1 | 4.5% | 2.6% | (many diffs) |
| 9 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_030972.3 | 4.5% | 2.6% | (many diffs) |
| 10 | human | 162966 | ZNF600 | zinc finger protein 600 | NM_198457.4 | 4.3% | 2.6% | (many diffs) |
| 11 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289952.1 | 4.2% | 2.6% | (many diffs) |
| 12 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001363550.1 | 3.8% | 2.2% | (many diffs) |
| 13 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_005258909.4 | 3.8% | 2.2% | (many diffs) |
| 14 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451509.1 | 3.8% | 2.2% | (many diffs) |
| 15 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001039886.4 | 3.5% | 2% | (many diffs) |
| 16 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001321424.1 | 3.5% | 2% | (many diffs) |
| 17 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001321425.1 | 3.5% | 2% | (many diffs) |
| 18 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451506.1 | 3.5% | 2% | (many diffs) |
| 19 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451507.1 | 3.5% | 2% | (many diffs) |
| 20 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451508.1 | 3.5% | 2% | (many diffs) |
| 21 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753718.2 | 3.1% | (many diffs) | |
| 22 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753717.2 | 2.6% | (many diffs) | |
| 23 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 2.6% | (many diffs) | |
| 24 | human | 79986 | ZNF702P | zinc finger protein 702, ps... | NR_003578.1 | 2.5% | (many diffs) | |
| 25 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 2.5% | (many diffs) | |
| 26 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_935832.3 | 2.2% | (many diffs) | |
| 27 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_002958314.1 | 2.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 174
- ORF length:
- 108
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG AATAATTCCC TCCATTCTTC ATTACCCATA CAAAAATTGG GAAGTACACA 121 TGAGAGAAAA ATCTTTCCAA TGTAATGAGA GTGGCAAATC CTTTAATTAT AGCTACCCAA 181 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac