Construct: ORF TRCN0000473292

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016033.1_s317c1
Derived from:
ccsbBroadEn_11484
DNA Barcode:
TGCTTACACTGCGATGGTTGTTCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CLEC4M (10332)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000473292
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10332 CLEC4M C-type lectin domain family... XM_006722611.2 94.4% 92.2% (many diffs)
2 human 10332 CLEC4M C-type lectin domain family... NM_014257.5 94.3% 92.2% (many diffs)
3 human 10332 CLEC4M C-type lectin domain family... XM_006722613.3 92.4% 92% (many diffs)
4 human 10332 CLEC4M C-type lectin domain family... XM_006722612.3 90.6% 87.8% (many diffs)
5 human 30835 CD209 CD209 molecule NM_021155.4 89.4% 86.6% (many diffs)
6 human 10332 CLEC4M C-type lectin domain family... NM_001144905.2 89% 86.6% (many diffs)
7 human 10332 CLEC4M C-type lectin domain family... NM_001144910.2 88.9% 86.7% (many diffs)
8 human 30835 CD209 CD209 molecule NM_001144897.2 87.9% 85.1% (many diffs)
9 human 10332 CLEC4M C-type lectin domain family... XM_006722614.3 87.5% 87.5% (many diffs)
10 human 10332 CLEC4M C-type lectin domain family... NM_001144904.2 86.8% 86.4% (many diffs)
11 human 30835 CD209 CD209 molecule NM_001144896.2 83.4% 80.6% (many diffs)
12 human 10332 CLEC4M C-type lectin domain family... NM_001144909.2 83.1% 80.7% (many diffs)
13 human 10332 CLEC4M C-type lectin domain family... XR_936147.2 81.1% (many diffs)
14 human 10332 CLEC4M C-type lectin domain family... NM_001144907.2 80.4% 76.9% (many diffs)
15 human 30835 CD209 CD209 molecule NM_001144894.2 78.5% 75.7% (many diffs)
16 human 10332 CLEC4M C-type lectin domain family... XM_006722615.2 75.5% 70.9% (many diffs)
17 human 10332 CLEC4M C-type lectin domain family... NM_001144911.2 73.2% 70.3% (many diffs)
18 human 10332 CLEC4M C-type lectin domain family... XR_430125.2 70.3% (many diffs)
19 human 30835 CD209 CD209 molecule NM_001144895.2 69.4% 66.5% (many diffs)
20 human 10332 CLEC4M C-type lectin domain family... NM_001144906.2 63.1% 59.4% (many diffs)
21 human 30835 CD209 CD209 molecule NM_001144893.2 58.5% 55.6% (many diffs)
22 human 30835 CD209 CD209 molecule XM_005272472.4 58% 55.1% (many diffs)
23 human 10332 CLEC4M C-type lectin domain family... NM_001144908.2 53% 47.8% (many diffs)
24 human 30835 CD209 CD209 molecule NM_001144899.2 52.3% 49.5% (many diffs)
25 human 10332 CLEC4M C-type lectin domain family... NR_026707.2 49.3% (many diffs)
26 human 10332 CLEC4M C-type lectin domain family... NR_026708.2 44.4% (many diffs)
27 human 10332 CLEC4M C-type lectin domain family... NR_026709.2 42.6% (many diffs)
28 human 10332 CLEC4M C-type lectin domain family... XR_001753584.1 40.4% (many diffs)
29 human 10332 CLEC4M C-type lectin domain family... XR_001753583.1 38.8% (many diffs)
30 human 30835 CD209 CD209 molecule NR_026692.2 24.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1230
ORF length:
1161
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gagtgactcc aaggaaccaa gactgcagca gctgggcctc ctggaggagg
121aacagctgag aggccttgga ttccgacaga ctcgaggata caagagctta gcagggtgtc
181ttggccatgg tcccctggtg ctgcaactcc tctccttcac gctcttggct gggctccttg
241tccaagtgtc caaggtcccc agctccataa gtcaggaaca atccaggcaa gacgcgatct
301accagaacct gacccagctt aaagctgcag tgggtgagct ctcagagaaa tccaagctgc
361aggagatcta ccaggagctg acccagctga aggctgcagt gggtgagctt ccagagaaat
421ctaagctgca ggagatctac caggagctga cccggctgaa ggctgcagtg ggtgagcttc
481cagagaaatc taagctgcag gagatctacc aggagctgac ctggctgaag gctgcagtgg
541gtgagttgcc agagaaatcc aagctgcagg agatctacca ggagctgacc cggctgaagg
601ctgcagtggg tgagttgcca gagaaatcca agctgcagga gatctaccag gagctgacgg
661agctgaaggc tgcagtgggt gagttgccag agaaatccaa gctgcaggag atctaccagg
721agctgaccca gctgaaggct gcagtgggtg agttgccaga ccagtccaag cagcagcaaa
781tctatcaaga actgaccgat ttgaagactg catttgaacg cctgtgccgc cactgtccca
841aggactggac attcttccaa ggaaactgtt acttcatgtc taactcccag cggaactggc
901acgactccgt caccgccTGC CAGGAAGTGA GGGCCCAGCT CGTCGTAATC AAAACTGCTG
961AGGAGCAGAA CTTCCTACAG CTGCAGACTT CCAGGAGTAA CCGCTTCTCC TGGATGGGAC
1021TTTCAGACCT AAATCAGGAA GGCACGTGGC AATGGGTGGA CGGCTCACCT CTGTCACCCA
1081GCTTCCAGCG GTACTGGAAC AGTGGAGAAC CCAACAATAG CGGGAATGAA GACTGTGCGG
1141AATTTAGTGG CAGTGGCTGG AACGACAATC GATGTGACGT TGACAATTAC TGGATCTGCA
1201AAAAGCCCGC AGCCTGCTTC AGAGACGAAT TGCCAACTTT CTTGTACAAA GTGGTTGATA
1261TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1321CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATGCTT
1381ACACTGCGAT GGTTGTTCTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1441tgaaagatt

Download FASTA (ORF) (Full)