Construct: ORF TRCN0000473292
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016033.1_s317c1
- Derived from:
- ccsbBroadEn_11484
- DNA Barcode:
- TGCTTACACTGCGATGGTTGTTCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC4M (10332)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473292
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722611.2 | 94.4% | 92.2% | (many diffs) |
| 2 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_014257.5 | 94.3% | 92.2% | (many diffs) |
| 3 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722613.3 | 92.4% | 92% | (many diffs) |
| 4 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722612.3 | 90.6% | 87.8% | (many diffs) |
| 5 | human | 30835 | CD209 | CD209 molecule | NM_021155.4 | 89.4% | 86.6% | (many diffs) |
| 6 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144905.2 | 89% | 86.6% | (many diffs) |
| 7 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144910.2 | 88.9% | 86.7% | (many diffs) |
| 8 | human | 30835 | CD209 | CD209 molecule | NM_001144897.2 | 87.9% | 85.1% | (many diffs) |
| 9 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722614.3 | 87.5% | 87.5% | (many diffs) |
| 10 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144904.2 | 86.8% | 86.4% | (many diffs) |
| 11 | human | 30835 | CD209 | CD209 molecule | NM_001144896.2 | 83.4% | 80.6% | (many diffs) |
| 12 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144909.2 | 83.1% | 80.7% | (many diffs) |
| 13 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_936147.2 | 81.1% | (many diffs) | |
| 14 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144907.2 | 80.4% | 76.9% | (many diffs) |
| 15 | human | 30835 | CD209 | CD209 molecule | NM_001144894.2 | 78.5% | 75.7% | (many diffs) |
| 16 | human | 10332 | CLEC4M | C-type lectin domain family... | XM_006722615.2 | 75.5% | 70.9% | (many diffs) |
| 17 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144911.2 | 73.2% | 70.3% | (many diffs) |
| 18 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_430125.2 | 70.3% | (many diffs) | |
| 19 | human | 30835 | CD209 | CD209 molecule | NM_001144895.2 | 69.4% | 66.5% | (many diffs) |
| 20 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144906.2 | 63.1% | 59.4% | (many diffs) |
| 21 | human | 30835 | CD209 | CD209 molecule | NM_001144893.2 | 58.5% | 55.6% | (many diffs) |
| 22 | human | 30835 | CD209 | CD209 molecule | XM_005272472.4 | 58% | 55.1% | (many diffs) |
| 23 | human | 10332 | CLEC4M | C-type lectin domain family... | NM_001144908.2 | 53% | 47.8% | (many diffs) |
| 24 | human | 30835 | CD209 | CD209 molecule | NM_001144899.2 | 52.3% | 49.5% | (many diffs) |
| 25 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026707.2 | 49.3% | (many diffs) | |
| 26 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026708.2 | 44.4% | (many diffs) | |
| 27 | human | 10332 | CLEC4M | C-type lectin domain family... | NR_026709.2 | 42.6% | (many diffs) | |
| 28 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_001753584.1 | 40.4% | (many diffs) | |
| 29 | human | 10332 | CLEC4M | C-type lectin domain family... | XR_001753583.1 | 38.8% | (many diffs) | |
| 30 | human | 30835 | CD209 | CD209 molecule | NR_026692.2 | 24.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1230
- ORF length:
- 1161
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gagtgactcc aaggaaccaa gactgcagca gctgggcctc ctggaggagg 121 aacagctgag aggccttgga ttccgacaga ctcgaggata caagagctta gcagggtgtc 181 ttggccatgg tcccctggtg ctgcaactcc tctccttcac gctcttggct gggctccttg 241 tccaagtgtc caaggtcccc agctccataa gtcaggaaca atccaggcaa gacgcgatct 301 accagaacct gacccagctt aaagctgcag tgggtgagct ctcagagaaa tccaagctgc 361 aggagatcta ccaggagctg acccagctga aggctgcagt gggtgagctt ccagagaaat 421 ctaagctgca ggagatctac caggagctga cccggctgaa ggctgcagtg ggtgagcttc 481 cagagaaatc taagctgcag gagatctacc aggagctgac ctggctgaag gctgcagtgg 541 gtgagttgcc agagaaatcc aagctgcagg agatctacca ggagctgacc cggctgaagg 601 ctgcagtggg tgagttgcca gagaaatcca agctgcagga gatctaccag gagctgacgg 661 agctgaaggc tgcagtgggt gagttgccag agaaatccaa gctgcaggag atctaccagg 721 agctgaccca gctgaaggct gcagtgggtg agttgccaga ccagtccaag cagcagcaaa 781 tctatcaaga actgaccgat ttgaagactg catttgaacg cctgtgccgc cactgtccca 841 aggactggac attcttccaa ggaaactgtt acttcatgtc taactcccag cggaactggc 901 acgactccgt caccgccTGC CAGGAAGTGA GGGCCCAGCT CGTCGTAATC AAAACTGCTG 961 AGGAGCAGAA CTTCCTACAG CTGCAGACTT CCAGGAGTAA CCGCTTCTCC TGGATGGGAC 1021 TTTCAGACCT AAATCAGGAA GGCACGTGGC AATGGGTGGA CGGCTCACCT CTGTCACCCA 1081 GCTTCCAGCG GTACTGGAAC AGTGGAGAAC CCAACAATAG CGGGAATGAA GACTGTGCGG 1141 AATTTAGTGG CAGTGGCTGG AACGACAATC GATGTGACGT TGACAATTAC TGGATCTGCA 1201 AAAAGCCCGC AGCCTGCTTC AGAGACGAAT TGCCAACTTT CTTGTACAAA GTGGTTGATA 1261 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 1321 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGATGCTT 1381 ACACTGCGAT GGTTGTTCTA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 1441 tgaaagatt