Construct: ORF TRCN0000473767
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009870.1_s317c1
- Derived from:
- ccsbBroadEn_15837
- DNA Barcode:
- CCCCACCGGGTTAAATCTTCCTCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RSRC1 (51319)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000473767
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 51319 | RSRC1 | arginine and serine rich co... | NM_001271834.1 | 100% | 100% | |
| 2 | human | 51319 | RSRC1 | arginine and serine rich co... | NM_001271838.2 | 82.6% | 82.6% | 320_493del |
| 3 | human | 51319 | RSRC1 | arginine and serine rich co... | NM_016625.3 | 82.6% | 82.6% | 320_493del |
| 4 | human | 51319 | RSRC1 | arginine and serine rich co... | XM_024453562.1 | 62.2% | 56.3% | (many diffs) |
| 5 | human | 51319 | RSRC1 | arginine and serine rich co... | XM_024453563.1 | 62.2% | 56.3% | (many diffs) |
| 6 | human | 51319 | RSRC1 | arginine and serine rich co... | XM_024453560.1 | 51.4% | 46.7% | (many diffs) |
| 7 | human | 51319 | RSRC1 | arginine and serine rich co... | XR_002959540.1 | 10.8% | (many diffs) | |
| 8 | mouse | 66880 | Rsrc1 | arginine/serine-rich coiled... | NM_025822.3 | 72.3% | 76% | (many diffs) |
| 9 | mouse | 66880 | Rsrc1 | arginine/serine-rich coiled... | XM_017319695.1 | 71.4% | 75.1% | (many diffs) |
| 10 | mouse | 66880 | Rsrc1 | arginine/serine-rich coiled... | XM_017319692.1 | 42.6% | 44.6% | (many diffs) |
| 11 | mouse | 66880 | Rsrc1 | arginine/serine-rich coiled... | XM_017319693.1 | 42.6% | 44.6% | (many diffs) |
| 12 | mouse | 66880 | Rsrc1 | arginine/serine-rich coiled... | XM_017319694.1 | 42.6% | 44.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 894
- ORF length:
- 828
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggg acgtcggtca tcagatactg aagaagaaag cagaagcaag agaaaaaaga 121 aacaccgtag acggtcctcc tcgagcagtt cttcagatag tagaacatac agccgaaaga 181 aaggaggaag gaaatcaaga tcaaagtcaa gatcttggtc cagagatctt cagcctcgtt 241 cacattctta tgatagaaga cgcaggcatc gatcaagcag tagctcttct tatggctcca 301 gaaggaaacg aagtcgaagt cgttcaaggg gtcgagggaa atcctataga gttcagaggt 361 ctaggtcaaa aagcagaaca agaagggaat ctggaaacat caaagctgga ttagaacatc 421 tgccaccagc tgaacaggcc aaagccagac tacagctggt tcttgaagct gctgcaaaag 481 ctgatgaagc attgaaagcc aaagaaagaa atgaggaaga agcaaagaga agaaaggagg 541 aagaccaagc caccctggta gaacaagtaa aaagagtaaa agaaattgaa gctattgaaa 601 gtgattcttt tgttcagcag acattcagat caagtaaaga agtcaaaaag tcagtggaac 661 ctagtgaagt gaaacaagca acttcaacat caggaccagc atcagcagtt gctgatccac 721 ccagtactga aaaagaaata gatcctacca gcatccctac tgctatcaag taccaagatg 781 acaattccct ggcccatcca aatttattta tcGAGAAAGC TGATGCTGAG GAAAAATGGT 841 TCAAGAGATT AATTGCTCTC CGACAAGAAA GACTAATGGG CAGTCCTGTG GCCTACCCAA 901 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 961 ATTCTACGTA GTAATGAACT AGCCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 1021 TATCTTGTGG AAAGGACGAC CCCACCGGGT TAAATCTTCC TCCACGCGTT AAGTCgacaa 1081 tcaacctctg gattacaaaa tttgtgaaag att