Construct: ORF TRCN0000474295

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005177.1_s317c1
Derived from:
ccsbBroadEn_00464
DNA Barcode:
CCCAAGTAGACGGGTGTAGCACGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
DTNA (1837)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000474295
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1837 DTNA dystrobrevin alpha NM_001128175.2 100% 100%
2 human 1837 DTNA dystrobrevin alpha XM_017025601.2 100% 100%
3 human 1837 DTNA dystrobrevin alpha XM_017025602.2 100% 100%
4 human 1837 DTNA dystrobrevin alpha NM_001392.5 99.1% 99.1% 1002_1010delTGATACTTG
5 human 1837 DTNA dystrobrevin alpha XM_017025600.2 99.1% 99.1% 1002_1010delTGATACTTG
6 human 1837 DTNA dystrobrevin alpha XM_017025597.2 72.2% 70% (many diffs)
7 human 1837 DTNA dystrobrevin alpha XM_017025598.2 72.2% 70% (many diffs)
8 human 1837 DTNA dystrobrevin alpha NM_001198941.2 72.1% 69.8% (many diffs)
9 human 1837 DTNA dystrobrevin alpha XM_011525853.3 72.1% 69.8% (many diffs)
10 human 1837 DTNA dystrobrevin alpha XM_024451098.1 72.1% 69.8% (many diffs)
11 human 1837 DTNA dystrobrevin alpha NM_032979.5 71.7% 69.4% (many diffs)
12 human 1837 DTNA dystrobrevin alpha NM_001198945.2 70.6% 48.5% (many diffs)
13 human 1837 DTNA dystrobrevin alpha XM_017025595.1 68.1% 66.8% (many diffs)
14 human 1837 DTNA dystrobrevin alpha NM_032978.7 65% 64% (many diffs)
15 human 1837 DTNA dystrobrevin alpha NM_001391.5 64.6% 63.6% (many diffs)
16 human 1837 DTNA dystrobrevin alpha XM_017025593.2 53.9% 52.4% (many diffs)
17 human 1837 DTNA dystrobrevin alpha XM_017025594.2 53.9% 52.4% (many diffs)
18 human 1837 DTNA dystrobrevin alpha NM_001198940.2 53.8% 52.3% (many diffs)
19 human 1837 DTNA dystrobrevin alpha XM_017025587.2 53.8% 52.3% (many diffs)
20 human 1837 DTNA dystrobrevin alpha XM_017025588.2 53.8% 52.3% (many diffs)
21 human 1837 DTNA dystrobrevin alpha XM_017025589.2 53.8% 52.3% (many diffs)
22 human 1837 DTNA dystrobrevin alpha XM_017025590.2 53.8% 52.3% (many diffs)
23 human 1837 DTNA dystrobrevin alpha XM_017025591.2 53.8% 52.3% (many diffs)
24 human 1837 DTNA dystrobrevin alpha XM_017025585.2 53.7% 52.2% (many diffs)
25 human 1837 DTNA dystrobrevin alpha XM_017025586.2 53.7% 52.2% (many diffs)
26 human 1837 DTNA dystrobrevin alpha NM_032975.3 53.6% 52.1% (many diffs)
27 human 1837 DTNA dystrobrevin alpha XM_017025584.2 53.6% 52.1% (many diffs)
28 human 1837 DTNA dystrobrevin alpha NM_001198939.2 53.3% 51.8% (many diffs)
29 human 1837 DTNA dystrobrevin alpha XM_024451097.1 51.6% 50.7% (many diffs)
30 human 1837 DTNA dystrobrevin alpha XM_005258221.5 51.6% 50.6% (many diffs)
31 human 1837 DTNA dystrobrevin alpha XM_017025578.2 51.6% 50.6% (many diffs)
32 human 1837 DTNA dystrobrevin alpha XM_017025579.2 51.6% 50.6% (many diffs)
33 human 1837 DTNA dystrobrevin alpha XM_017025580.1 51.6% 50.6% (many diffs)
34 human 1837 DTNA dystrobrevin alpha XM_017025581.2 51.6% 50.6% (many diffs)
35 human 1837 DTNA dystrobrevin alpha XM_017025582.2 51.6% 50.6% (many diffs)
36 human 1837 DTNA dystrobrevin alpha XM_024451096.1 50.9% 49.5% (many diffs)
37 human 1837 DTNA dystrobrevin alpha NM_001198938.2 50.8% 49.4% (many diffs)
38 human 1837 DTNA dystrobrevin alpha XM_017025577.2 50.8% 49.4% (many diffs)
39 human 1837 DTNA dystrobrevin alpha XM_017025576.2 50.6% 49.2% (many diffs)
40 human 1837 DTNA dystrobrevin alpha NM_001390.4 49.6% 48.8% (many diffs)
41 human 1837 DTNA dystrobrevin alpha XM_017025575.2 48.8% 47.8% (many diffs)
42 human 1837 DTNA dystrobrevin alpha XR_001753155.1 26% (many diffs)
43 human 1837 DTNA dystrobrevin alpha XR_001753160.1 25.7% (many diffs)
44 human 1837 DTNA dystrobrevin alpha XR_001753153.1 25.7% (many diffs)
45 human 1837 DTNA dystrobrevin alpha XR_001753161.1 25.2% (many diffs)
46 human 1837 DTNA dystrobrevin alpha XR_001753156.1 25.2% (many diffs)
47 human 1837 DTNA dystrobrevin alpha XR_001753163.1 22.8% (many diffs)
48 human 1837 DTNA dystrobrevin alpha XR_001753158.1 22.8% (many diffs)
49 human 1837 DTNA dystrobrevin alpha XR_001753162.1 22.3% (many diffs)
50 human 1837 DTNA dystrobrevin alpha NM_001198943.1 17.3% 16.2% (many diffs)
51 human 1837 DTNA dystrobrevin alpha XR_001753157.1 16.2% (many diffs)
52 human 1837 DTNA dystrobrevin alpha XR_001753152.1 16.1% (many diffs)
53 human 1837 DTNA dystrobrevin alpha XR_001753159.1 15.9% (many diffs)
54 human 1837 DTNA dystrobrevin alpha XR_001753154.1 15.9% (many diffs)
55 human 1837 DTNA dystrobrevin alpha XR_002958166.1 13% (many diffs)
56 mouse 13527 Dtna dystrobrevin alpha NM_010087.4 92.8% 99.1% (many diffs)
57 mouse 13527 Dtna dystrobrevin alpha XM_030250324.1 92.8% 99.1% (many diffs)
58 mouse 13527 Dtna dystrobrevin alpha XM_030250325.1 92.8% 99.1% (many diffs)
59 mouse 13527 Dtna dystrobrevin alpha XM_030250323.1 92% 98.3% (many diffs)
60 mouse 13527 Dtna dystrobrevin alpha XM_030250322.1 66.6% 69.4% (many diffs)
61 mouse 13527 Dtna dystrobrevin alpha XM_030250321.1 66.2% 69% (many diffs)
62 mouse 13527 Dtna dystrobrevin alpha XM_017317817.2 60.4% 63.6% (many diffs)
63 mouse 13527 Dtna dystrobrevin alpha NM_001285811.1 60.1% 63.3% (many diffs)
64 mouse 13527 Dtna dystrobrevin alpha XM_011246835.1 60.1% 63.3% (many diffs)
65 mouse 13527 Dtna dystrobrevin alpha NM_001285817.1 49.9% 52.1% (many diffs)
66 mouse 13527 Dtna dystrobrevin alpha NM_001361215.1 49.9% 52.1% (many diffs)
67 mouse 13527 Dtna dystrobrevin alpha NM_001361217.1 49.9% 52.1% (many diffs)
68 mouse 13527 Dtna dystrobrevin alpha NM_207650.4 49.9% 52.1% (many diffs)
69 mouse 13527 Dtna dystrobrevin alpha XM_030250318.1 49.9% 52.1% (many diffs)
70 mouse 13527 Dtna dystrobrevin alpha XM_030250319.1 49.9% 52.1% (many diffs)
71 mouse 13527 Dtna dystrobrevin alpha XM_030250320.1 49.9% 52.1% (many diffs)
72 mouse 13527 Dtna dystrobrevin alpha NM_001285810.1 49.6% 51.9% (many diffs)
73 mouse 13527 Dtna dystrobrevin alpha NM_001285813.1 49.6% 51.9% (many diffs)
74 mouse 13527 Dtna dystrobrevin alpha XM_030250317.1 49.6% 51.9% (many diffs)
75 mouse 13527 Dtna dystrobrevin alpha NM_001285808.1 49.3% 51.6% (many diffs)
76 mouse 13527 Dtna dystrobrevin alpha XM_011246833.1 48.1% 50.3% (many diffs)
77 mouse 13527 Dtna dystrobrevin alpha NM_001361216.1 47% 49.2% (many diffs)
78 mouse 13527 Dtna dystrobrevin alpha XM_011246838.1 46.3% 48.8% (many diffs)
79 mouse 13527 Dtna dystrobrevin alpha XM_011246830.1 46.1% 48.6% (many diffs)
80 mouse 13527 Dtna dystrobrevin alpha XM_017317811.1 46.1% 48.6% (many diffs)
81 mouse 13527 Dtna dystrobrevin alpha NM_001285807.1 45.9% 48.3% (many diffs)
82 mouse 13527 Dtna dystrobrevin alpha XM_011246827.1 43.7% 46.1% (many diffs)
83 mouse 13527 Dtna dystrobrevin alpha XR_003952492.1 20.3% (many diffs)
84 mouse 13527 Dtna dystrobrevin alpha XR_001782342.1 13.3% (many diffs)
85 mouse 13527 Dtna dystrobrevin alpha XR_001782341.1 13.2% (many diffs)
86 mouse 13527 Dtna dystrobrevin alpha XR_001782340.1 13.2% (many diffs)
87 mouse 13527 Dtna dystrobrevin alpha XR_003952501.1 12.9% (many diffs)
88 mouse 13527 Dtna dystrobrevin alpha XR_003952494.1 12.7% (many diffs)
89 mouse 13527 Dtna dystrobrevin alpha XR_003952498.1 12.7% (many diffs)
90 mouse 13527 Dtna dystrobrevin alpha XR_003952497.1 12.6% (many diffs)
91 mouse 13527 Dtna dystrobrevin alpha XR_003952500.1 12.6% (many diffs)
92 mouse 13527 Dtna dystrobrevin alpha XR_001782338.2 12.6% (many diffs)
93 mouse 13527 Dtna dystrobrevin alpha XR_001782337.2 12.4% (many diffs)
94 mouse 13527 Dtna dystrobrevin alpha XR_003952495.1 12.4% (many diffs)
95 mouse 13527 Dtna dystrobrevin alpha XR_001782334.2 12.4% (many diffs)
96 mouse 13527 Dtna dystrobrevin alpha XR_001782339.2 12.3% (many diffs)
97 mouse 13527 Dtna dystrobrevin alpha XR_003952499.1 12.3% (many diffs)
98 mouse 13527 Dtna dystrobrevin alpha XR_003952493.1 12.3% (many diffs)
99 mouse 13527 Dtna dystrobrevin alpha XR_003952496.1 12.1% (many diffs)
100 mouse 13527 Dtna dystrobrevin alpha XR_001782336.2 12.1% (many diffs)
101 mouse 13527 Dtna dystrobrevin alpha XR_001782335.2 12.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1179
ORF length:
1113
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgat tgaagatagt gggaaaagag gaaataccat ggcagaaaga agacagctgt
121ttgcagagat gagggctcaa gatctggatc gcatccgact ctccacctac agaacagcat
181gcaagcttag gtttgttcag aagaaatgca atttgcacct ggtggacata tggaatgtca
241tagaagcatt gcgggaaaat gctctgaaca acctggaccc aaacactgaa ctcaacgtgt
301cccgcttaga ggctgtgctc tccactattt tttaccagct caacaaacgg atgccaacca
361ctcaccaaat ccatgtggag cagtccatca gcctcctcct taacttcctg cttgcagcgt
421ttgatccgga aggccatggt aaaatttcag tatttgctgt caaaatggct ttagccacat
481tgtgtggagg gaagatcatg gacaaattaa gatatatttt ctcaatgatt tctgactcca
541gtggggtgat ggtttatgga cgatatgacc aattccttcg ggaagttctc aaactaccca
601cggcagtttt tgaaggtcct tcatttggtt acacagaaca gtcagccaga tcctgtttct
661cccaacagaa aaaagtcacg ttaaatggtt tcttggacac gcttatgtca gatcctcccc
721cgcagtgtct ggtctggttg cctcttctgc atcgactagc aaATGTGGAA AATGTCTTCC
781ATCCGGTTGA GTGTTCCTAC TGCCACAGTG AGAGTATGAT GGGATTTCGC TACCGATGCC
841AACAGTGTCA CAATTACCAG CTCTGTCAGG ACTGCTTCTG GAGGGGACAT GCCGGTGGTT
901CTCATAGCAA CCAGCACCAA ATGAAAGAGT ACACGTCATG GAAATCACCT GCTAAGAAGC
961TGACTAATGC ATTAAGCAAG TCCCTGAGCT GTGCTTCCAG CCGTGAACCT TTGCACCCCA
1021TGTTCCCAGA TCAGCCTGAG AAGCCACTCA ACTTGGCTCA CATCGTGCCT CCCAGACCTG
1081TAACCAGCAT GAACGACACC CTGTTCTCCC ACTCTGTTCC CTCCTCAGGA AGTCCTTTTA
1141TTACCAGGAG CTCGGACGGT GCTTTTGGTG GATGCGTCTA CCCAACTTTC TTGTACAAAG
1201TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1261GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1321ACGACCCAAG TAGACGGGTG TAGCACGAAC GCGTTAAGTC gacaatcaac ctctggatta
1381caaaatttgt gaaagatt

Download FASTA (ORF) (Full)