Construct: ORF TRCN0000476850
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005707.1_s317c1
- Derived from:
- ccsbBroadEn_07993
- DNA Barcode:
- ACTACCACCCCAGAAATTGACATC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZBTB20 (26137)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000476850
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001164343.2 | 99.9% | 99.8% | 1409C>T |
| 2 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001164344.3 | 99.9% | 99.8% | 1409C>T |
| 3 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001164345.3 | 99.9% | 99.8% | 1409C>T |
| 4 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001164346.2 | 99.9% | 99.8% | 1409C>T |
| 5 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001164347.2 | 99.9% | 99.8% | 1409C>T |
| 6 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001348801.2 | 99.9% | 99.8% | 1409C>T |
| 7 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001348802.2 | 99.9% | 99.8% | 1409C>T |
| 8 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001348804.2 | 99.9% | 99.8% | 1409C>T |
| 9 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001348805.2 | 99.9% | 99.8% | 1409C>T |
| 10 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_015642.6 | 99.9% | 99.8% | 1409C>T |
| 11 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001164342.2 | 90.1% | 90% | 1_219del;1628C>T |
| 12 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001348800.2 | 90.1% | 90% | 1_219del;1628C>T |
| 13 | human | 26137 | ZBTB20 | zinc finger and BTB domain ... | NM_001348803.2 | 90.1% | 90% | 1_219del;1628C>T |
| 14 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | NM_181058.1 | 92.2% | 97.6% | (many diffs) |
| 15 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522422.3 | 92.2% | 97.6% | (many diffs) |
| 16 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522424.3 | 92.2% | 97.6% | (many diffs) |
| 17 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317099.1 | 92.2% | 97.6% | (many diffs) |
| 18 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317100.1 | 92.2% | 97.6% | (many diffs) |
| 19 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317101.1 | 92.2% | 97.6% | (many diffs) |
| 20 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317102.1 | 92.2% | 97.6% | (many diffs) |
| 21 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317103.1 | 92.2% | 97.6% | (many diffs) |
| 22 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317104.1 | 92.2% | 97.6% | (many diffs) |
| 23 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317105.1 | 92.2% | 97.6% | (many diffs) |
| 24 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | NM_001285805.1 | 83.1% | 87.9% | (many diffs) |
| 25 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | NM_019778.2 | 83.1% | 87.9% | (many diffs) |
| 26 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522412.3 | 83.1% | 87.9% | (many diffs) |
| 27 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522413.3 | 83.1% | 87.9% | (many diffs) |
| 28 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522414.2 | 83.1% | 87.9% | (many diffs) |
| 29 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522415.3 | 83.1% | 87.9% | (many diffs) |
| 30 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522416.3 | 83.1% | 87.9% | (many diffs) |
| 31 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522418.3 | 83.1% | 87.9% | (many diffs) |
| 32 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245989.2 | 83.1% | 87.9% | (many diffs) |
| 33 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245990.2 | 83.1% | 87.9% | (many diffs) |
| 34 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317091.1 | 83.1% | 87.9% | (many diffs) |
| 35 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317092.1 | 83.1% | 87.9% | (many diffs) |
| 36 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317093.1 | 83.1% | 87.9% | (many diffs) |
| 37 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317094.1 | 83.1% | 87.9% | (many diffs) |
| 38 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317095.1 | 83.1% | 87.9% | (many diffs) |
| 39 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317096.1 | 83.1% | 87.9% | (many diffs) |
| 40 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317097.1 | 83.1% | 87.9% | (many diffs) |
| 41 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317098.1 | 83.1% | 87.9% | (many diffs) |
| 42 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522403.3 | 82.6% | 87.3% | (many diffs) |
| 43 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522404.3 | 82.6% | 87.3% | (many diffs) |
| 44 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522406.3 | 82.6% | 87.3% | (many diffs) |
| 45 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522407.3 | 82.6% | 87.3% | (many diffs) |
| 46 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522408.3 | 82.6% | 87.3% | (many diffs) |
| 47 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522409.3 | 82.6% | 87.3% | (many diffs) |
| 48 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522410.3 | 82.6% | 87.3% | (many diffs) |
| 49 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_006522411.3 | 82.6% | 87.3% | (many diffs) |
| 50 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245978.2 | 82.6% | 87.3% | (many diffs) |
| 51 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245979.2 | 82.6% | 87.3% | (many diffs) |
| 52 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245980.2 | 82.6% | 87.3% | (many diffs) |
| 53 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245981.2 | 82.6% | 87.3% | (many diffs) |
| 54 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245982.2 | 82.6% | 87.3% | (many diffs) |
| 55 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245983.2 | 82.6% | 87.3% | (many diffs) |
| 56 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245984.2 | 82.6% | 87.3% | (many diffs) |
| 57 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245985.2 | 82.6% | 87.3% | (many diffs) |
| 58 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245986.2 | 82.6% | 87.3% | (many diffs) |
| 59 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245987.2 | 82.6% | 87.3% | (many diffs) |
| 60 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_011245988.2 | 82.6% | 87.3% | (many diffs) |
| 61 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317087.1 | 82.6% | 87.3% | (many diffs) |
| 62 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317088.1 | 82.6% | 87.3% | (many diffs) |
| 63 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317089.1 | 82.6% | 87.3% | (many diffs) |
| 64 | mouse | 56490 | Zbtb20 | zinc finger and BTB domain ... | XM_017317090.1 | 82.6% | 87.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2070
- ORF length:
- 2004
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgac cgagcgcatt cacagcatca accttcacaa cttcagcaat tccgtgctcg 121 agaccctcaa cgagcagcgc aaccgtggcc acttctgtga cgtaacggtg cgcatccacg 181 ggagcatgct gcgcgcacac cgctgcgtgc tggcagccgg cagccccttc ttccaggaca 241 aactgctgct tggctacagc gacatcgaga tcccgtcggt ggtgtcagtg cagtcagtgc 301 aaaagctcat tgacttcatg tacagcggcg tgctacgggt ctcgcagtcg gaagctctgc 361 agatcctcac ggccgccagc atcctgcaga tcaaaacagt catcgacgag tgcacgcgca 421 tcgtgtcaca gaacgtgggc gatgtgttcc cggggatcca ggactcgggc caggacacgc 481 cgcggggcac tcccgagtca ggcacgtcag gccagagcag cgacacggag tcgggctacc 541 tgcagagcca cccacagcac agcgtggaca ggatctactc ggcactctac gcgtgctcca 601 tgcagaatgg cagcggcgag cgctcttttt acagcggcgc agtggtcagc caccacgaga 661 ctgcgctcgg cctgccccgc gaccaccaca tggaagaccc cagctggatc acacgcatcc 721 atgagcgctc gcagcagatg gagcgctacc tgtccaccac ccccgagacc acgcactgcc 781 gcaagcagcc ccggcctgtg cgcatccaga ccctagtggg caacatccac atcaagcagg 841 agatggagga cgattacgac tactacgggc agcaaagggt gcagatcctg gaacgcaacg 901 aatccgagga gtgcacggaa gacacagacc aggccgaggg caccgagagt gagcccaaag 961 gtgaaagctt cgactcgggc gtcagctcct ccataggcac cgagcctgac tcggtggagc 1021 agcagtttgg gcctggggcg gcgcgggaca gccaggctga acccacccaa cccgagcagg 1081 ctgcagaagc ccccgctgag ggtggtccgc agacaaacca gctagaaaca ggtgcttcct 1141 ctccggagag aagcaatgaa gtggagatgg acagcactgt tatcactgtc agcaacagct 1201 ccgacaagag cgtcctacaa cagccttcgg tcaacacgtc catcgggcag ccattgccaa 1261 gtacccagct ctacttacgc cagacagaaa ccctcaccag caacctgagg atgcctctga 1321 ccttgaccag caacacgcag gtcattggca cagctggcaa cacctacctg ccagccctct 1381 tcactaccca gcccgcgggc agtggcccca agcctttcct cttcagcctg ccacagcccc 1441 tggcaggcca gcagacccag tttgtgacag tgttccagcc cggtctgtcg acctttactg 1501 cacagctgcc agcgccacag cccctggcct catccgcagg ccacagcaca gccagtgggc 1561 aaggcgaaaa aaagccttat gagtgcactc tctgcaacaa gactttcacc gccaaacaga 1621 actacgtcaa gcacatgttc gtacacacag gtgagaagcc ccaccaatgc agcatctgtt 1681 ggcgctcctt ctccTTAAAG GATTACCTTA TCAAGCACAT GGTGACACAC ACAGGAGTGA 1741 GGGCATACCA GTGTAGTATC TGCAACAAGC GCTTCACCCA GAAGAGCTCC CTCAACGTGC 1801 ACATGCGCCT CCACCGGGGA GAGAAGTCCT ACGAGTGCTA CATCTGCAAA AAGAAGTTCT 1861 CTCACAAGAC CCTCCTGGAG CGACACGTGG CCCTGCACAG TGCCAGCAAT GGGACCCCCC 1921 CTGCAGGCAC ACCCCCAGGT GCCCGCGCTG GCCCCCCAGG CGTGGTGGCC TGCACGGAGG 1981 GGACCACTTA CGTCTGCTCC GTCTGCCCAG CAAAGTTTGA CCAAATCGAG CAGTTCAACG 2041 ACCACATGAG GATGCATGTG TCTGACGGAT ACCCAACTTT CTTGTACAAA GTGGTTGATA 2101 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 2161 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAACTAC 2221 CACCCCAGAA ATTGACATCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 2281 tgaaagatt