Construct: ORF TRCN0000479707

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000914.1_s317c1
Derived from:
ccsbBroadEn_12758
DNA Barcode:
ATCACGTGACTAGTTACTTAATGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATAD3B (83858)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479707
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83858 ATAD3B ATPase family AAA domain co... NM_001317238.2 100% 100%
2 human 83858 ATAD3B ATPase family AAA domain co... NM_031921.6 88% 83.9% (many diffs)
3 human 83858 ATAD3B ATPase family AAA domain co... XM_011542244.1 86.4% 86.4% 1_282del
4 human 55210 ATAD3A ATPase family AAA domain co... NM_001170536.2 79.7% 76% (many diffs)
5 human 83858 ATAD3B ATPase family AAA domain co... XM_005244806.3 77.6% 72.5% (many diffs)
6 human 55210 ATAD3A ATPase family AAA domain co... NM_001170535.3 77.5% 69.2% (many diffs)
7 human 55210 ATAD3A ATPase family AAA domain co... XM_024448098.1 74.5% 66.5% (many diffs)
8 human 55210 ATAD3A ATPase family AAA domain co... NM_018188.5 74.1% 72.1% (many diffs)
9 human 83858 ATAD3B ATPase family AAA domain co... XR_946776.2 67.5% (many diffs)
10 human 83858 ATAD3B ATPase family AAA domain co... XR_001737470.1 67.1% (many diffs)
11 human 83858 ATAD3B ATPase family AAA domain co... XR_241045.2 66% (many diffs)
12 human 55210 ATAD3A ATPase family AAA domain co... XR_001737282.1 65.5% (many diffs)
13 human 55210 ATAD3A ATPase family AAA domain co... XR_002956997.1 63.5% (many diffs)
14 human 219293 ATAD3C ATPase family AAA domain co... NM_001039211.3 62.3% 58% (many diffs)
15 human 83858 ATAD3B ATPase family AAA domain co... XM_011542241.3 61.8% 52.9% (many diffs)
16 human 83858 ATAD3B ATPase family AAA domain co... XR_001737468.1 56.5% (many diffs)
17 human 83858 ATAD3B ATPase family AAA domain co... XR_002957738.1 48.3% (many diffs)
18 human 83858 ATAD3B ATPase family AAA domain co... XR_001737469.1 46% 1_1161del;2361_2925del;3533_3921del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1872
ORF length:
1806
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgca gctggaagcc ctgaacctgc tgcacacact agtctgggca cggagtctct
121gccgtgccgg agctgtgcag acacaggagc ggctgtcagg cagtgccagc cctgagcaag
181tgccagctgg tgagtgctgt gctctgcagg agtatgaggc cgccgtggag cagctcaaga
241gcgagcagat ccgggcgcag gctgaggaga ggaggaagac cctgagcgag gagacccggc
301agcaccaggc cagggcccag tatcaagaca agctggcccg gcagcgctac gaggaccaac
361tgaagcagca gcaacttctc aatgaggaga atttacggaa gcaggaggag tccgtgcaga
421agcaggaagc catgcggcga gccaccgtgg agcgggagat ggagctgcgg cacaagaatg
481agatgctgcg agtggagacc gaggcccggg cgcgcgccaa ggccgagcgg gagaatgcag
541acatcatccg cgagcagatc cgcctgaagg cgtccgagca ccgtcagacc gtcttggagt
601ccatcaggac ggctggcacc ttgtttgggg aaggattccg tgcctttgtg acagaccggg
661acaaagtgac agccacggtg gctgggctga cgctgctggc tgtcggggtc tactcagcca
721agaatgcgac agccgtcact ggccgcttca tcgaggctcg gctggggaag ccgtccctag
781tgagggagac gtcccgcatc acggtgctgg aggcgctgcg gcaccccatc caggtcagcc
841ggcggctcct cagtcgaccc caggacgtgc tggagggtgt tgtgcttagt cccagcctgg
901aagcacgggt gcgcgacatc gccatagcaa ccaggaacac caagaagaac cggggcctgt
961acaggcacat cctgctgtat gggccaccag gcaccgggaa gacgctgttt gccaagaaac
1021tcgccctgca ctcaggcatg gactacgcca tcatgacagg cggggacgtg gcccccatgg
1081ggcgggaagg cgtgaccgcc atgcacaagc tctttgactg ggccaatacc agccggcgcg
1141gcctcctgct cttcatggat gaagcagacg ccttccttcg gaagcgagcc actgaggaga
1201taagcaagga cctcagagcc acactgaacg ccttcctgta ccacatgggc caacacagca
1261acaaattcat gctggtcctg gccagcaatc tgcctgagca gttcgactgt gccatcaaca
1321gccgcattga cgtgatggtc cacttcgacc tgccgcagca ggaggagcgg gagcgcctgg
1381tgagactgca ttttgacaac tgtgttctta agccggccac agaaggaaaa cggcgcctga
1441agctggccca gtttgactac gggaggaagt gctcggaggt cgctcggctg acggagggca
1501tgtcgggccg ggagatcgcT CAGCTGGCCG TGTCCTGGCA GGCCACGGCA TATGCCTCCA
1561AGGACGGGGT CCTCACTGAG GCCATGATGG ACGCCTGTGT GCAAGATGCT GTCCAGCAGT
1621ACCGACAGAA GATGCGCTGG CTGAAGGCGG AGGGGCCTGG GCGCGGGGTC GAGCACCCCC
1681TATCCGGAGT CCAAGGCGAG ACCCTCACCT CATGGAGCCT GGCCACGGAC CCCTCCTACC
1741CCTGCCTTGC CGGCCCCTGC ACATTTAGGA TATGCTCCTG GATGGGGACT GGGCTGTGCC
1801CAGGGCCTCT GTCCCCCAGG ATGTCTTGTG GTGGCGGTCG GCCGTTCTGC CCCCCAGGGC
1861ACCCCCTGTT GTACCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1921ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1981CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAATC ACGTGACTAG TTACTTAATG
2041AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)