Construct: ORF TRCN0000479811
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016550.3_s317c1
- Derived from:
- ccsbBroadEn_15079
- DNA Barcode:
- TTGCCCCCTAACCCCGCCATAGCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1G1 (53944)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479811
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329606.2 | 72.7% | 72.7% | 1_345del |
| 2 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_022048.5 | 72.7% | 72.7% | 1_345del |
| 3 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329607.2 | 67.2% | 67.3% | (many diffs) |
| 4 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329605.2 | 62% | 62.1% | (many diffs) |
| 5 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242710.1 | 68.2% | 72.2% | (many diffs) |
| 6 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242709.1 | 66.9% | 70.6% | (many diffs) |
| 7 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | NM_173185.2 | 62.7% | 66.4% | (many diffs) |
| 8 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242708.1 | 62.7% | 66.4% | (many diffs) |
| 9 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_017313273.1 | 61.8% | 63.3% | (many diffs) |
| 10 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_006511008.2 | 61.6% | 65% | (many diffs) |
| 11 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242703.1 | 61.6% | 65% | (many diffs) |
| 12 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242704.1 | 61.6% | 65% | (many diffs) |
| 13 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242705.1 | 61.6% | 65% | (many diffs) |
| 14 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242706.1 | 61.6% | 65% | (many diffs) |
| 15 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242707.1 | 61.6% | 65% | (many diffs) |
| 16 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242711.1 | 59.5% | 59.6% | (many diffs) |
| 17 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242712.1 | 58.7% | 61.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 987
- ORF length:
- 921
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggt gctggagctc cttggcccta gcttggagga cttgtttgac ctctgtgacc 121 gaacatttac tttgaagacg gtgttaatga tagccatcca gctgctttct cgaatggaat 181 acgtgcactc aaagaacctc atttaccgag atgtcaagcc agagaacttc ctgattggtc 241 gacaaggcaa taagaaagag catgttatac acattataga ctttggactg gccaaggaat 301 acattgaccc cgaaaccaaa aaacacatac cttataggga acacaaaagt ttaactggaa 361 ctgcaagata tatgtctatc aacacgcatc ttggcaaaga gcaaagccgg agagatgatt 421 tggaagccct aggccatatg ttcatgtatt tccttcgagg cagcctcccc tggcaaggac 481 tcaaggctga cacattaaaa gagagatatc aaaaaattgg tgacaccaaa aggaatactc 541 ccattgaagc tctctgtgag aactttccag aggagatggc aacctaccTT CGATATGTCA 601 GGCGACTGGA CTTCTTTGAA AAACCTGATT ATGAGTATTT ACGGACCCTC TTCACAGACC 661 TCTTTGAAAA GAAAGGCTAC ACCTTTGACT ATGCCTATGA TTGGGTTGGG AGACCTATTC 721 CTACTCCAGT AGGGTCAGTT CACGTAGATT CTGGTGCATC TGCAATAACT CGAGAAAGCC 781 ACACACATAG GGATCGGCCA TCACAACAGC AGCCTCTTCG AAATCAGGTG GTTAGCTCAA 841 CCAATGGAGA GCTGAATGTT GATGATCCCA CGGGAGCCCA CTCCAATGCA CCAATCACAG 901 CTCATGCCGA GGTGGAGGTA GTGGAGGAAG CTAAGTGCTG CTGTTTCTTT AAGAGGAAAA 961 GGAAGAAGAC TGCTCAGCGC CACAAGTGCC CAACTTTCTT GTACAAAGTG GTTGATATCG 1021 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1081 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATTGCCCCC 1141 TAACCCCGCC ATAGCTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1201 aagatt