Construct: ORF TRCN0000480245

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005957.1_s317c1
Derived from:
ccsbBroadEn_12676
DNA Barcode:
AGGGTAGTTCTAAACACTCTTCTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABHD18 (80167)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000480245
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80167 ABHD18 abhydrolase domain containi... NM_001366044.1 100% 100%
2 human 80167 ABHD18 abhydrolase domain containi... NM_001366045.1 100% 100%
3 human 80167 ABHD18 abhydrolase domain containi... NM_001366047.1 100% 100%
4 human 80167 ABHD18 abhydrolase domain containi... NM_001319306.2 95.1% 95.2% 963_1011delinsG
5 human 80167 ABHD18 abhydrolase domain containi... XM_006714322.3 95.1% 95.2% 963_1011delinsG
6 human 80167 ABHD18 abhydrolase domain containi... NM_001366046.1 86.9% 86.9% 0_1ins126
7 human 80167 ABHD18 abhydrolase domain containi... NM_001366041.2 85% 85.1% 318_319ins102;861_909delinsG
8 human 80167 ABHD18 abhydrolase domain containi... NM_001319305.2 83.9% 84% 1_135del;1098_1146delinsG
9 human 80167 ABHD18 abhydrolase domain containi... NM_001319307.2 82.6% 82.7% 0_1ins126;837_885delinsG
10 human 80167 ABHD18 abhydrolase domain containi... NM_001366040.2 82.6% 82.7% 0_1ins126;837_885delinsG
11 human 80167 ABHD18 abhydrolase domain containi... NM_001366042.2 82.6% 82.7% 0_1ins126;837_885delinsG
12 human 80167 ABHD18 abhydrolase domain containi... XM_011532279.2 82.6% 82.7% 0_1ins126;837_885delinsG
13 human 80167 ABHD18 abhydrolase domain containi... NM_001366048.1 78.4% 78.4% 1_135del;453_454ins102
14 human 80167 ABHD18 abhydrolase domain containi... NM_025097.2 76.3% 76.3% 0_1ins228
15 human 80167 ABHD18 abhydrolase domain containi... NM_001366038.2 75.1% 67.4% (many diffs)
16 human 80167 ABHD18 abhydrolase domain containi... XM_011532278.3 75% 75.1% 1_135del;453_454ins102;996_1044delinsG
17 human 80167 ABHD18 abhydrolase domain containi... NM_001366037.2 72.6% 72.7% 0_1ins126;192_193ins102;735_783delinsG
18 human 80167 ABHD18 abhydrolase domain containi... NM_001366043.1 71.6% 71.6% 1_381del
19 human 80167 ABHD18 abhydrolase domain containi... NM_001358451.2 69.1% 69.1% 1_381del;1344_1392delinsG
20 human 80167 ABHD18 abhydrolase domain containi... XM_024454227.1 69.1% 69.1% 1_381del;1344_1392delinsG
21 human 80167 ABHD18 abhydrolase domain containi... NM_001358454.2 66.9% 67% 1_426del;1389_1437delinsG
22 human 80167 ABHD18 abhydrolase domain containi... XM_006714320.3 66.9% 67% 1_426del;1389_1437delinsG
23 human 80167 ABHD18 abhydrolase domain containi... XM_024454226.1 66.9% 67% 1_426del;1389_1437delinsG
24 human 80167 ABHD18 abhydrolase domain containi... NM_001039717.2 64% 64% 1_381del;699_700ins102
25 human 80167 ABHD18 abhydrolase domain containi... XM_011532276.2 61.9% 61.9% 1_426del;744_745ins102
26 human 80167 ABHD18 abhydrolase domain containi... NM_001366039.2 61.7% 61.8% 1_381del;699_700ins102;1242_1290delinsG
27 human 80167 ABHD18 abhydrolase domain containi... XM_011532274.3 59.8% 59.9% 1_426del;744_745ins102;1287_1335delinsG
28 mouse 269423 Abhd18 abhydrolase domain containi... XM_006500779.3 73.3% 73.7% (many diffs)
29 mouse 269423 Abhd18 abhydrolase domain containi... XM_006500780.3 73.3% 73.7% (many diffs)
30 mouse 269423 Abhd18 abhydrolase domain containi... XM_006500781.2 73.1% 72.4% (many diffs)
31 mouse 269423 Abhd18 abhydrolase domain containi... XM_017319592.1 73.1% 72.4% (many diffs)
32 mouse 269423 Abhd18 abhydrolase domain containi... NM_026622.3 61.3% 61.6% (many diffs)
33 mouse 269423 Abhd18 abhydrolase domain containi... XM_017319591.1 61.3% 61.6% (many diffs)
34 mouse 269423 Abhd18 abhydrolase domain containi... XR_001783694.1 30.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1032
ORF length:
963
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcccgtcct atgattaaag aagcccgaat ggcttcttta ttgttagaaa
121acccttatta tggctgcagg aaacccaagg accaagtaag gtccagctta aaaaatgtgt
181ccgacctttt tgtgatggga ggagctcttg ttttagaatc tgcagctctc ttgcactggc
241tagagaggga aggttacggc cctttaggaa tgactggaat atccatggga ggacacatgg
301cttccttagc ggtatccaac tggcctaagc ccatgccatt gattccatgc ctgtcttggt
361ccacagcatc tggggtcttc actacgggtg tgttgagtaa atcaattaat tggagggagc
421tggaaaagca atattatacc cagacagttt atgaagaaga aattattcac atgcttgaat
481actgtggaac agattctttc aaaatgggac aagagtttgt gaaacacttc actagcagtg
541cagacaagct aactaacctt aatctggttt ccagaacttt aaatttagat atatcaaacc
601aagttgtatc ccaaaaacct gctgactgcc ataattctag caaaacatct gtcagtgcga
661catcagaagg actcttattg caagatacct ctaagatgaa gcgcttcaat caaacacttt
721caaccaacaa aagtggttat acaagtcgca acccTCAGTC ATACCACCTA CTTAGTAAAG
781AACAAAGCAG AAACAGTCTT CGGAAAGAGT CTTTAATATT TATGAAAGGA GTCATGGATG
841AATGTACTCA TGTAGCAAAT TTCTCAGTCC CAGTTGATCC AAGCCTCATT ATAGTGGTTC
901AAGCCAAAGA AGATGCCTAT ATTCCACGAA CAGGAGTTCG AAGTTTACAA GAAATTTGGC
961CTGGTTGTGA AATCCGATAC TTAGAAGGGG GTCATATTAG TGCTTATCTT TTTAAACAAG
1021GACTCTTCAG GTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
1081ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
1141CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAAGG GTAGTTCTAA ACACTCTTCT
1201TACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)