Construct: ORF TRCN0000487884

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF019129.1_s317c1
DNA Barcode:
GTGCGCCGACGAAGTCCCGTACGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CSNK1D (1453)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000487884
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1453 CSNK1D casein kinase 1 delta NM_139062.4 99.9% 99.7% 1227_1228insG
2 human 1453 CSNK1D casein kinase 1 delta NM_001893.6 96.8% 95.4% (many diffs)
3 human 1453 CSNK1D casein kinase 1 delta NM_001363749.2 94.9% 92.3% (many diffs)
4 human 1453 CSNK1D casein kinase 1 delta XM_005256336.4 89% 87.5% (many diffs)
5 human 102800317 TPTEP2-CSNK1E TPTEP2-CSNK1E readthrough NM_001289912.2 77.9% 84.1% (many diffs)
6 human 1454 CSNK1E casein kinase 1 epsilon NM_001894.4 77.9% 84.1% (many diffs)
7 human 1454 CSNK1E casein kinase 1 epsilon NM_152221.3 77.9% 84.1% (many diffs)
8 human 1453 CSNK1D casein kinase 1 delta XR_243518.4 30.4% (many diffs)
9 human 1453 CSNK1D casein kinase 1 delta XR_933922.3 30.3% (many diffs)
10 human 1453 CSNK1D casein kinase 1 delta XR_430028.4 29% 1_319del;1205_1686del;2029_4228delinsG
11 human 1453 CSNK1D casein kinase 1 delta XR_002957961.1 28.6% (many diffs)
12 human 1453 CSNK1D casein kinase 1 delta XR_933923.3 27.1% (many diffs)
13 human 1453 CSNK1D casein kinase 1 delta NR_110578.2 26.2% 1_369del;703_704ins229;1368_3572delinsG
14 mouse 104318 Csnk1d casein kinase 1, delta NM_027874.2 89.9% 99.5% (many diffs)
15 mouse 104318 Csnk1d casein kinase 1, delta NM_139059.2 87% 95.2% (many diffs)
16 mouse 104318 Csnk1d casein kinase 1, delta XM_011248662.1 85.3% 91.9% (many diffs)
17 mouse 104318 Csnk1d casein kinase 1, delta XM_011248663.2 85.3% 91.9% (many diffs)
18 mouse 27373 Csnk1e casein kinase 1, epsilon NM_001289899.1 70.4% 71% (many diffs)
19 mouse 27373 Csnk1e casein kinase 1, epsilon XM_017316660.1 70.4% 71% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1302
ORF length:
1230
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggagctg agagtcggga acaggtaccg gctgggccgg aagatcggca
121gcggctcctt cggagacatc tatctcggta cggacattgc tgcaggagaa gaggttgcca
181tcaagcttga atgtgtcaaa accaaacacc ctcagctcca cattgagagc aaaatctaca
241agatgatgca gggaggagtg ggcatcccca ccatcagatg gtgcggggca gagggggact
301acaacgtcat ggtgatggag ctgctggggc caagcctgga ggacctcttc aacttctgct
361ccaggaaatt cagcctcaaa accgtcctgc tgcttgctga ccaaatgatc agtcgcatcg
421aatacattca ttcaaagaac ttcatccacc gggatgtgaa gccagacaac ttcctcatgg
481gcctggggaa gaagggcaac ctggtgtaca tcatcgactt cgggctggcc aagaagtacc
541gggatgcacg cacccaccag cacatcccct atcgtgagaa caagaacctc acggggacgg
601cgcggtacgc ctccatcaac acgcaccttg gaattgaaca atcccgaaga gatgacttgg
661agtctctggg ctacgtgcta atgtacttca acctgggctc tctcccctgg caggggctga
721aggctgccac caagagacag aaatacgaaa ggattagcga gaagaaaatg tccaccccca
781tcgaagtgtt gtgtaaaggc tacccttccg aatttgccac atacctgaat ttctgccgtt
841ccttgcgttt tgacgacaag cctgactact cgtacctgcg gcagcttttc cggaatctgt
901tccatcgcca gggcttctcc tatgactacg tgttcgactg gaacatgctc aaatttggtg
961ccagccgggc cgccgatgac gccgagcggg agcgcaggga ccgagaggag cggctgagac
1021actcgcggaa cccggctacc cgcggcctcc cttccacagc ctccggccgc ctgcggggga
1081cgcaggaagt ggctcccccC ACACCCCTCA CCCCTACCTC ACACACGGCT AACACCTCCC
1141CCCGGCCCGT CTCCGGCATG GAGAGAGAGC GGAAAGTGAG TATGCGGCTG CACCGCGGGG
1201CCCCCGTCAA CATCTCCTCG TCCGACCTCA CAGGCCGACA AGATACCTCT CGCATGTCCA
1261CCTCACAGAA TAGCATTCCT TTCGAACACC ACGGCAAGGA CCCAGCTTTC TTGTACAAAG
1321TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1381GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1441ACGAGTGCGC CGACGAAGTC CCGTACGGAC GCGTTAAGTC gacaatcaac ctctggatta
1501caaaatttgt gaaagatt

Download FASTA (ORF) (Full)