Construct: ORF TRCN0000488036

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF020721.1_s317c1
DNA Barcode:
ATTCCCATATCGAACTAAAGTGCA
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
TGFBR1 (7046)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000488036
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7046 TGFBR1 transforming growth factor ... NM_004612.4 100% 100%
2 human 7046 TGFBR1 transforming growth factor ... NM_001306210.2 99.2% 99.2% 343_354del
3 human 7046 TGFBR1 transforming growth factor ... XM_011518949.2 86.2% 86.2% 0_1ins207
4 human 7046 TGFBR1 transforming growth factor ... XM_024447658.1 86.2% 86.2% 0_1ins207
5 human 7046 TGFBR1 transforming growth factor ... XM_011518948.2 85.6% 85.6% 0_1ins207;136_147del
6 human 7046 TGFBR1 transforming growth factor ... XM_017015063.1 85.6% 85.6% 0_1ins207;136_147del
7 human 7046 TGFBR1 transforming growth factor ... NM_001130916.3 84.6% 84.6% 342_343ins231
8 human 7046 TGFBR1 transforming growth factor ... XM_011518950.2 70.9% 70.9% 0_1ins207;135_136ins231
9 mouse 21812 Tgfbr1 transforming growth factor,... NM_001312868.1 90.4% 96.4% (many diffs)
10 mouse 21812 Tgfbr1 transforming growth factor,... NM_009370.3 89.7% 95.6% (many diffs)
11 mouse 21812 Tgfbr1 transforming growth factor,... XM_017320103.1 78.3% 84.6% (many diffs)
12 mouse 21812 Tgfbr1 transforming growth factor,... NM_001312869.1 75.2% 73.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
72
ORF end:
1581
ORF length:
1509
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61caggcttcac catggaggcg gcggtcgctg ctccgcgtcc ccggctgctc ctcctcgtgc
121tggcggcggc ggcggcggcg gcggcggcgc tgctcccggg ggcgacggcg ttacagtgtt
181tctgccacct ctgtacaaaa gacaatttta cttgtgtgac agatgggctc tgctttgtct
241ctgtcacaga gaccacagac aaagttatac acaacagcat gtgtatagct gaaattgact
301taattcctcg agataggccg tttgtatgtg caccctcttc aaaaactggg tctgtgacta
361caacatattg ctgcaatcag gaccattgca ataaaataga acttccaact actgtaaagt
421catcacctgg ccttggtcct gtggaactgg cagctgtcat tgctggacca gtgtgcttcg
481tctgcatctc actcatgttg atggtctata tctgccacaa ccgcactgtc attcaccatc
541gagtgccaaa tgaagaggac ccttcattag atcgcccttt tatttcagag ggtactacgt
601tgaaagactt aatttatgat atgacaacgt caggttctgg ctcaggttta ccattgcttg
661ttcagagaac aattgcgaga actattgtgt tacaagaaag cattggcaaa ggtcgatttg
721gagaagtttg gagaggaaag tggcggggag aagaagttgc tgttaagata ttctcctcta
781gagaagaacg ttcgtggttc cgtgaggcag agatttatca aactgtaatg ttacgtcatg
841aaaacatcct gggatttata gcagcagaca ataaagacaa tggtacttgg actcagctct
901ggttggtgtc agattatcat gagcatggat ccctttttga ttacttaaac agatacacag
961ttactgtgga aggaatgata aaacttgctc tgtccacggc gagcggtctt gcccatcttc
1021acatggagat tgttggtacc caaggaaagc cagccattgc tcatagagat ttgaaatcaa
1081agaatatctt ggtaaagaag aatggaactt gctgtattgc agacttagga ctggcagtaa
1141gacatgattc agccacagat accattgata ttgctccaaa ccacagagtg ggaacaaaaa
1201ggtacatggc ccctgaagtt ctcgatgatt ccataaatat gaaacatttt gaaTCCTTCA
1261AACGTGCTGA CATCTATGCA ATGGGCTTAG TATTCTGGGA AATTGCTCGA CGATGTTCCA
1321TTGGTGGAAT TCATGAAGAT TACCAACTGC CTTATTATGA TCTTGTACCT TCTGACCCAT
1381CAGTTGAAGA AATGAGAAAA GTTGTTTGTG AACAGAAGTT AAGGCCAAAT ATCCCAAACA
1441GATGGCAGAG CTGTGAAGCC TTGAGAGTAA TGGCTAAAAT TATGAGAGAA TGTTGGTATG
1501CCAATGGAGC AGCTAGGCTT ACAGCATTGC GGATTAAGAA AACATTATCG CAACTCAGTC
1561AACAGGAAGG CATCAAAATG TAAGACCCAG CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1621AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1681TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA TTCCCATATC
1741GAACTAAAGT GCAACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1801att

Download FASTA (ORF) (Full)

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