Construct: ORF TRCN0000488064
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF019491.1_s317c1
- DNA Barcode:
- TTCGGGGAGCAGCTCCGAAACTCT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1G1 (53944)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000488064
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329606.2 | 90.6% | 87.9% | (many diffs) |
| 2 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_022048.5 | 90.6% | 87.9% | (many diffs) |
| 3 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329607.2 | 87.3% | 85% | (many diffs) |
| 4 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329605.2 | 81.1% | 77.3% | (many diffs) |
| 5 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242712.1 | 90.3% | 92.8% | (many diffs) |
| 6 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242711.1 | 88.2% | 90.2% | (many diffs) |
| 7 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242710.1 | 85.4% | 85.5% | (many diffs) |
| 8 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242709.1 | 83.8% | 83.9% | (many diffs) |
| 9 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_017313273.1 | 79.5% | 75.5% | (many diffs) |
| 10 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | NM_173185.2 | 78.6% | 77.8% | (many diffs) |
| 11 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242708.1 | 78.6% | 77.8% | (many diffs) |
| 12 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_006511008.2 | 77.3% | 76.5% | (many diffs) |
| 13 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242703.1 | 77.3% | 76.5% | (many diffs) |
| 14 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242704.1 | 77.3% | 76.5% | (many diffs) |
| 15 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242705.1 | 77.3% | 76.5% | (many diffs) |
| 16 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242706.1 | 77.3% | 76.5% | (many diffs) |
| 17 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242707.1 | 77.3% | 76.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 1272
- ORF length:
- 1179
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaatccg 61 cggccgcccc cttcaccgaa ttctgtagga tcatggacca tcctagtagg gaaaaggatg 121 aaagacaacg gacaactaaa cccatggcac aaaggagtgc acactgctct cgaccatctg 181 gctcctcatc gtcctctggg gttcttatgg tgggacccaa cttcagggtt ggcaagaaga 241 taggatgtgg gaacttcgga gagctcagat taggtaaaaa tctctacacc aatgaatatg 301 tagcaatcaa actggaacca ataaaatcac gtgctccaca gcttcattta gagtacagat 361 tttataaaca gcttggcagt gcaggtgaag gtctcccaca ggtgtattac tttggaccat 421 gtgggaaata taatgccatg gtgctggagc tccttggccc tagcttggag gacttgtttg 481 acctctgtga ccgaacattt actttgaaga cggtgttaat gatagccatc cagttgcttt 541 ctcgaatgga atacgtgcac tcaaagaacc tcatttaccg agatgtcaag ccagagaact 601 tcctgattgg tcgacaaggc aataagaaag agcatgttat acacattata gactttggac 661 tggccaagga atacattgac cccgaaacca aaaaacacat accttatagg gaacacaaaa 721 gtttaactgg aactgcaaga tatatgtcta tcaacacgca tcttggcaaa gagcaaagcc 781 ggagagatga tttggaagcc ctaggccata tgttcatgta tttccttcga ggcagcctcc 841 cctggcaagg actcaaggct gacacattaa aagagagata tcaaaaaatt ggtgacacca 901 aaaggaatac tcccattgaa gctctctgtg agaactttcc agaggagatg gcaacctacc 961 TTCGATATGT CAGGCGACTG GACTTCTTTG AAAAACCTGA TTATGAGTAT TTACGGACCC 1021 TCTTCACAGA CCTCTTTGAA AAGAAAGGCT ACACCTTTGA CTATGCCTAT GATTGGGTTG 1081 GGAGACCTAT TCCTACTCCA GTAGGGTCAG TTCACGTAGA TTCTGGTGCA TCTGCAATAA 1141 CTCGAGAAAG CCACACACAT AGGGATCGGC CATCACAACA GCAGCCTCTT CGAAATCAGA 1201 GCCTTAGGAC TGTTACAGCT GAGCATTATG ATGTTAACAA CTCAGCCATC TGGCACAGGG 1261 GAAGAGGCAC CAAGGGTGGG CGCGCCGACC CAGCTTTCTT GTACAAAGTG GTTGATATCG 1321 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 1381 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GATTCGGGGA 1441 GCAGCTCCGA AACTCTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 1501 aagatt