Construct: ORF TRCN0000489732
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF021398.1_s317c1
- DNA Barcode:
- TAATGTCAATGTAAAACACCATGT
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CSNK1G1 (53944)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000489732
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329606.2 | 82% | 53.5% | (many diffs) |
| 2 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_022048.5 | 82% | 53.5% | (many diffs) |
| 3 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329607.2 | 79% | 51.5% | (many diffs) |
| 4 | human | 53944 | CSNK1G1 | casein kinase 1 gamma 1 | NM_001329605.2 | 73.2% | 47.5% | (many diffs) |
| 5 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364145.2 | 48.4% | 32.8% | (many diffs) |
| 6 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001270573.2 | 48.2% | 32.9% | (many diffs) |
| 7 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364149.2 | 48.2% | 32.9% | (many diffs) |
| 8 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364150.2 | 48.2% | 32.9% | (many diffs) |
| 9 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364144.2 | 45.8% | 30.6% | (many diffs) |
| 10 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364148.2 | 42.4% | 25.1% | (many diffs) |
| 11 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001270574.2 | 41.8% | 24.6% | (many diffs) |
| 12 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364147.2 | 41.6% | 24.7% | (many diffs) |
| 13 | human | 1456 | CSNK1G3 | casein kinase 1 gamma 3 | NM_001364146.2 | 39.7% | 22.9% | (many diffs) |
| 14 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242711.1 | 82.7% | 55% | (many diffs) |
| 15 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242712.1 | 82.6% | 55.6% | (many diffs) |
| 16 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242710.1 | 76.3% | 51.4% | (many diffs) |
| 17 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242709.1 | 74.9% | 50.4% | (many diffs) |
| 18 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_017313273.1 | 71.2% | 50.3% | (many diffs) |
| 19 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | NM_173185.2 | 71.1% | 47.2% | (many diffs) |
| 20 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242708.1 | 71.1% | 47.2% | (many diffs) |
| 21 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_006511008.2 | 69.9% | 46.4% | (many diffs) |
| 22 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242703.1 | 69.9% | 46.4% | (many diffs) |
| 23 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242704.1 | 69.9% | 46.4% | (many diffs) |
| 24 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242705.1 | 69.9% | 46.4% | (many diffs) |
| 25 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242706.1 | 69.9% | 46.4% | (many diffs) |
| 26 | mouse | 214897 | Csnk1g1 | casein kinase 1, gamma 1 | XM_011242707.1 | 69.9% | 46.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 93
- ORF end:
- 774
- ORF length:
- 681
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaatccg 61 cggccgcccc cttcaccgaa ttctgtagga tcatggacca tcctagtagg gaaaaggatg 121 aaagacaacg gacaactaaa cccatggcac aaaggagtgc acactgctct cgaccatctg 181 gctcctcatc gtcctctggg gttcttatgg tgggacccaa cttcagggtt ggcaagaaga 241 taggatgtgg gaacttcgga gagctcagat taggtaaaaa tctctacacc aatgaatatg 301 tagcaatcaa actggaacca ataaaatcac gtgctccaca gcttcattta gagtacagat 361 tttataaaca gcttggcagt gcaggtgaag gtctcccaca ggtgtattac tttggaccat 421 gtgggaaata taatgccatg gtgctggagc tccttggccc tagcttggag gacttgtttg 481 acctctgtga ccgaacattt actttgaaga cggtgttaat gatagccatc cagttgcttt 541 ctcgaatgga atacgtgcac tcaaagaacc tcatttaccg agatgtcaag ccagagaact 601 tcctgattgg tcgacaaggc aataagaaag agcatgttat acacattata gactttggac 661 tggccaagga atacattgac cccgaaacca aaaaacacat accttatagg gaacacaaaa 721 gtttaactgg aactgcaaga tatatgtcta tcaacacgca tcttggcaaa ggctgacaCA 781 TTAAAAGAGA GATATCAAAA AATTGGTGAC ACCAAAAGGA ATACTCCCAT TGAAGCTCTC 841 TGTGAGAACT TTCCAGAGGA GATGGCAACC TACCTTCGAT ATGTCAGGCG ACTGGACTTC 901 TTTGAAAAAC CTGATTATGA GTATTTACGG ACCCTCTTCA CAGACCTCTT TGAAAAGAAA 961 GGCTACACCT TTGACTATGC CTATGATTGG GTTGGGAGAC CTATTCCTAC TCCAGTAGGG 1021 TCAGTTCACG TAGATTCTGG TGCATCTGCA ATAACTCGAG AAAGCCACAC ACATAGGGAT 1081 CGGCCATCAC AACAGCAGCC TCTTCGAAAT CAGAGCCTTA GGACTGTTAC AGCTGAGCAT 1141 TATGATGTTA ACAACTCAGC CATCTGGCAC AGGGGAAGAG GCACCAAGGG TGGGCGCGCC 1201 GACCCAGCTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC 1261 GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG 1321 CTTTATATAT CTTGTGGAAA GGACGATAAT GTCAATGTAA AACACCATGT ACGCGTTAAG 1381 TCgacaatca acctctggat tacaaaattt gtgaaagatt