Construct: ORF ccsbBroad304_01742

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004955.1_s304c1, BRDN0000409740
Derived from:
ccsbBroadEn_01742
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBE2V2 (7336)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_01742
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7336 UBE2V2 ubiquitin conjugating enzym... NM_003350.3 100% 100%
2 human 7336 UBE2V2 ubiquitin conjugating enzym... XM_017013808.2 97.4% 95.8% 4_4delCinsGCGGTCTCCA;7A>G
3 human 7336 UBE2V2 ubiquitin conjugating enzym... XM_011517583.3 83.4% 80.9% (many diffs)
4 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001032288.3 83% 89.1% (many diffs)
5 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257395.2 82.6% 88.9% (many diffs)
6 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257393.2 71% 75.2% (many diffs)
7 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_021988.6 71% 75.2% (many diffs)
8 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_199144.3 71% 75.2% (many diffs)
9 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257397.2 61.3% 64.1% (many diffs)
10 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257398.1 61.3% 64.1% (many diffs)
11 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257399.2 61.3% 64.1% (many diffs)
12 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001282576.1 61.3% 64.1% (many diffs)
13 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001282579.1 61.3% 64.1% (many diffs)
14 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001257396.2 59% 65.3% (many diffs)
15 human 7335 UBE2V1 ubiquitin conjugating enzym... NM_001282580.1 35.1% 38.7% (many diffs)
16 human 387522 TMEM189-UBE2V1 TMEM189-UBE2V1 readthrough NM_199203.2 32.6% 34.8% (many diffs)
17 mouse 70620 Ube2v2 ubiquitin-conjugating enzym... NM_023585.4 95.1% 98.6% (many diffs)
18 mouse 70620 Ube2v2 ubiquitin-conjugating enzym... XM_011246011.2 68.5% 71% (many diffs)
19 mouse 70620 Ube2v2 ubiquitin-conjugating enzym... NM_001159351.1 67.8% 70.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
501
ORF length:
435
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc ggtctccaca ggagttaaag ttcctcgtaa ttttcgcttg ttggaagaac
121ttgaagaagg acaaaaagga gtaggcgacg gtacagttag ctggggcctt gaagatgatg
181aagatatgac acttacaagg tggacaggca tgattattgg gccaccaagg acaaattatg
241aaaacagaat atatagcctg aaagtagaat gtggacctaa atacccagaa gctcctccgt
301cagttagatt tgtaacaaaa attaatatga acggaataaa taattccagt gggatggtgg
361atgcccggag cataccagtg ttagcaaaat ggcaaaattc atatagcatt aaagttgtac
421ttcaagagct aagacgtcta atgatgtcca aagaaaatat gaagcttcca cagccaccag
481aaggacaaac atacaacaat tacccaactt tcttgtacaa agtggttggt aagcctatcc
541ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
601ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)