Construct: ORF ccsbBroad304_02658

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003593.1_s304c1, BRDN0000410362
Derived from:
ccsbBroadEn_02658
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PACSIN2 (11252)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_02658
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11252 PACSIN2 protein kinase C and casein... NM_001184970.3 100% 100%
2 human 11252 PACSIN2 protein kinase C and casein... NM_007229.3 100% 100%
3 human 11252 PACSIN2 protein kinase C and casein... NM_001349969.1 99.5% 99.5% 907_912delGATGAA
4 human 11252 PACSIN2 protein kinase C and casein... NM_001349970.1 99.5% 99.5% 907_912delGATGAA
5 human 11252 PACSIN2 protein kinase C and casein... NM_001184971.1 91.5% 91.5% 1028_1029ins123
6 human 11252 PACSIN2 protein kinase C and casein... NM_001349968.1 91.1% 91.1% 907_912delGATGAA;1034_1035ins123
7 human 11252 PACSIN2 protein kinase C and casein... NM_001349971.1 91.1% 91.1% 907_912delGATGAA;1034_1035ins123
8 human 11252 PACSIN2 protein kinase C and casein... NM_001349972.1 91.1% 91.1% 907_912delGATGAA;1034_1035ins123
9 human 11252 PACSIN2 protein kinase C and casein... NM_001349973.1 91.1% 91.1% 907_912delGATGAA;1034_1035ins123
10 human 11252 PACSIN2 protein kinase C and casein... NM_001349974.1 82.7% 82.7% 0_1ins123;784_789delGATGAA;911_912ins123
11 mouse 23970 Pacsin2 protein kinase C and casein... NM_001159509.1 89% 93.8% (many diffs)
12 mouse 23970 Pacsin2 protein kinase C and casein... NM_001159510.1 89% 93.8% (many diffs)
13 mouse 23970 Pacsin2 protein kinase C and casein... NM_011862.3 89% 93.8% (many diffs)
14 mouse 23970 Pacsin2 protein kinase C and casein... XM_006520979.1 88.6% 93.4% (many diffs)
15 mouse 23970 Pacsin2 protein kinase C and casein... XM_006520980.3 88.6% 93.4% (many diffs)
16 mouse 23970 Pacsin2 protein kinase C and casein... XM_006520981.3 88.6% 93.4% (many diffs)
17 mouse 23970 Pacsin2 protein kinase C and casein... XM_006520982.1 88.6% 93.4% (many diffs)
18 mouse 23970 Pacsin2 protein kinase C and casein... XM_006520983.3 88.6% 93.4% (many diffs)
19 mouse 23970 Pacsin2 protein kinase C and casein... XM_011245633.2 88.6% 93.4% (many diffs)
20 mouse 23970 Pacsin2 protein kinase C and casein... XM_006520985.2 81.2% 87% (many diffs)
21 mouse 23970 Pacsin2 protein kinase C and casein... XM_006520984.1 80.9% 86.6% (many diffs)
22 mouse 23970 Pacsin2 protein kinase C and casein... XM_017316605.1 80.9% 86.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1524
ORF length:
1458
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc tgtcacatat gatgattccg ttggagtaga agtgtccagc gacagcttct
121gggaggtcgg gaactacaag cggactgtga agcggatcga cgatggccac cgcctgtgca
181gcgacctcat gaactgcctg catgagcggg cgcgcatcga gaaggcgtat gcgcagcagc
241tcactgagtg ggcccggcgc tggaggcagc tcgtggagaa agggccccag tacgggaccg
301tggagaaggc ctggatggcc ttcatgtccg aggcagagag ggtgagcgag ctgcacctcg
361aggtgaaggc ctcactgatg aacgatgact tcgagaagat caagaactgg cagaaggaag
421cctttcacaa gcagatgatg ggcggcttca aggagaccaa ggaagctgag gacggctttc
481ggaaggcaca gaagccctgg gccaagaagc tgaaagaggt agaagcagca aagaaagccc
541accatgcagc gtgcaaagag gagaagctgg ctatctcacg agaagccaac agcaaggcag
601acccatccct caaccctgaa cagctcaaga aattgcaaga caaaatagaa aagtgcaagc
661aagatgttct taagaccaaa gagaagtatg agaagtccct gaaggaactc gaccagggca
721caccccagta catggagaac atggagcagg tgtttgagca gtgccagcag ttcgaggaga
781aacgccttcg cttcttccgg gaggttctgc tggaggttca gaagcaccta gacctgtcca
841atgtggctgg ctacaaagcc atttaccatg acctggagca gagcatcaga gcagctgatg
901cagtggagga cctgaggtgg ttccgagcca atcacgggcc gggcatggcc atgaactggc
961cgcagtttga ggagtggtcc gcagacctga atcgaaccct cagccggaga gagaagaaga
1021aggccactga cggcgtcacc ctgacgggca tcaaccagac aggcgaccag tctctgccga
1081gtaagcccag cagcaccctt aatgtcccga gcaaccccgc ccagtctgcg cagtcacagt
1141ccagctacaa ccccttcgag gatgaggacg acacgggcag caccgtcagt gagaaggacg
1201acactaaggc caaaaatgtg agcagctacg agaagaccca gagctatccc accgactggt
1261cagacgatga gtctaacaac cccttctcct ccacggatgc caatggggac tcgaatccat
1321tcgacgacga cgccacctcg gggacggaag tgcgagtccg ggccctgtat gactatgagg
1381ggcaggagca tgatgagctg agcttcaagg ctggggatga gctgaccaag atggaggacg
1441aggatgagca gggctggtgc aagggacgct tggacaacgg gcaagttggc ctatacccgg
1501caaattatgt ggaggcgatc cagtgcccaa ctttcttgta caaagtggtt ggtaagccta
1561tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1621gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)

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