Construct: ORF ccsbBroad304_07003

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016110.1_s304c1, BRDN0000402105
Derived from:
ccsbBroadEn_07003
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SSX4 (6759)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07003
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 548313 SSX4B SSX family member 4B NM_001034832.3 99.8% 100% 453T>C
2 human 6759 SSX4 SSX family member 4 NM_005636.4 99.8% 100% 453T>C
3 human 548313 SSX4B SSX family member 4B XM_017029613.1 99.8% 100% 453T>C
4 human 6759 SSX4 SSX family member 4 XM_017029759.1 99.8% 100% 453T>C
5 human 10214 SSX3 SSX family member 3 NM_021014.4 91.1% 80.8% (many diffs)
6 human 727837 SSX2B SSX family member 2B NM_001164417.3 91.1% 79.7% (many diffs)
7 human 6757 SSX2 SSX family member 2 NM_175698.2 91.1% 79.7% (many diffs)
8 human 280658 SSX7 SSX family member 7 NM_173358.2 90.6% 82.4% (many diffs)
9 human 6758 SSX5 SSX family member 5 NM_175723.1 89.7% 78.1% (many diffs)
10 human 6758 SSX5 SSX family member 5 XM_011543949.2 89.7% 78.1% (many diffs)
11 human 6758 SSX5 SSX family member 5 XM_017029758.2 89.7% 78.1% (many diffs)
12 human 6756 SSX1 SSX family member 1 NM_001278691.2 89.3% 79.2% (many diffs)
13 human 6756 SSX1 SSX family member 1 NM_005635.4 89.3% 79.2% (many diffs)
14 human 6757 SSX2 SSX family member 2 NM_001278697.1 80% 70% (many diffs)
15 human 727837 SSX2B SSX family member 2B NM_001278702.2 80% 70% (many diffs)
16 human 10214 SSX3 SSX family member 3 XM_011543885.2 79.2% 61.8% (many diffs)
17 human 280658 SSX7 SSX family member 7 XM_017029430.1 76.3% 69.5% (many diffs)
18 human 6758 SSX5 SSX family member 5 NM_021015.4 73.6% 64.1% (many diffs)
19 human 548313 SSX4B SSX family member 4B NM_001040612.2 71.9% 57% 329_330ins136;429_459del
20 human 6759 SSX4 SSX family member 4 NM_175729.1 71.9% 57% 329_330ins136;429_459del
21 human 727837 SSX2B SSX family member 2B NM_001278701.2 66.7% 56.8% (many diffs)
22 human 6757 SSX2 SSX family member 2 NM_003147.5 66.7% 56.8% (many diffs)
23 human 280658 SSX7 SSX family member 7 XM_017029431.1 62.5% 46.6% (many diffs)
24 human 280657 SSX6P SSX family member 6, pseudo... NR_028366.1 39% (many diffs)
25 human 280659 SSX8P SSX family member 8, pseudo... NR_027250.2 35% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
630
ORF length:
564
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa cggagacgac gcctttgcaa ggagacccag ggatgatgct caaatatcag
121agaagttacg aaaggccttc gatgatattg ccaaatactt ctctaagaaa gagtgggaaa
181agatgaaatc ctcggagaaa atcgtctatg tgtatatgaa gctaaactat gaggtcatga
241ctaaactagg tttcaaggtc accctcccac ctttcatgcg tagtaaacgg gctgcagact
301tccacgggaa tgattttggt aacgatcgaa accacaggaa tcaggttgaa cgtcctcaga
361tgactttcgg cagcctccag agaatcttcc cgaagatcat gcccaagaag ccagcagagg
421aagaaaatgg tttgaaggaa gtgccagagg catctggccc acaaaatgat gggaaacagc
481tgtgcccccc gggaaatcca agtaccttgg agaagatcaa caagacatct ggacccaaaa
541gggggaaaca tgcctggacc cacagactgc gtgagagaaa gcagctggtg gtttatgaag
601agatcagcga ccctgaggaa gatgacgagt acccaacttt cttgtacaaa gtggttggta
661agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
721ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)