Construct: ORF ccsbBroad304_07831

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010112.1_s304c1, BRDN0000408632
Derived from:
ccsbBroadEn_07831
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SAMD4A (23034)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_07831
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23034 SAMD4A sterile alpha motif domain ... NM_001161576.2 99.7% 99.8% 1_3delATG;268C>T
2 human 23034 SAMD4A sterile alpha motif domain ... XM_024449517.1 94.3% 94.4% 1_3delATG;268C>T;1779_1886del
3 human 23034 SAMD4A sterile alpha motif domain ... NM_015589.6 87.5% 87.4% 1_3delATG;268C>T;716_979del
4 human 23034 SAMD4A sterile alpha motif domain ... XM_024449516.1 85.8% 85.7% (many diffs)
5 human 23034 SAMD4A sterile alpha motif domain ... XM_024449514.1 83.3% 83.2% (many diffs)
6 human 23034 SAMD4A sterile alpha motif domain ... XM_024449515.1 83.3% 83.2% (many diffs)
7 human 23034 SAMD4A sterile alpha motif domain ... XM_024449519.1 79.5% 79.5% 0_1ins300;1476_1583del
8 human 23034 SAMD4A sterile alpha motif domain ... XM_024449518.1 70.2% 70.1% 0_1ins300;413_676del;1740_1847del
9 human 23034 SAMD4A sterile alpha motif domain ... NM_001161577.2 46.4% 46.4% 0_1ins960;816_923del
10 mouse 74480 Samd4 sterile alpha motif domain ... NM_028966.3 90.2% 94.2% (many diffs)
11 mouse 74480 Samd4 sterile alpha motif domain ... NM_001037221.2 79.1% 82.6% (many diffs)
12 mouse 74480 Samd4 sterile alpha motif domain ... XM_006519627.2 74.1% 77.2% (many diffs)
13 mouse 74480 Samd4 sterile alpha motif domain ... NM_001163433.1 65.9% 69% (many diffs)
14 mouse 74480 Samd4 sterile alpha motif domain ... XM_006519628.2 61.7% 64.5% (many diffs)
15 mouse 74480 Samd4 sterile alpha motif domain ... NM_001310544.1 43.2% 45% (many diffs)
16 mouse 74480 Samd4 sterile alpha motif domain ... XM_006519631.3 43.2% 45% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1956
ORF length:
1887
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gtttcgcgac caggtcgggg tgctggcggg ctggtttaag ggctggaacg
121agtgcgagca gactgttgcg ctgctgtcgc tgctcaagcg cgtgagccag acccaggccc
181gcttcctcca gctctgcctg gagcactcgc tggccgactg cgccgagctg cacgtcctcg
241aacgcgaggc caacagcccc ggaatcatta accaatggca acaggaatcc aaggataaag
301tgatttccct cctgttaact catctgcctt tgttgaagcc aggaaacctc gacgcgaaag
361tagaatatat gaaactgctg cccaaaatcc tggctcactc tattgaacac aaccagcaca
421ttgaggagag caggcagctg ctgtcctatg ctttgataca tccagccact tcgttagaag
481accgtagtgc tttagccatg tggctgaatc acttggagga ccgcacgtcg accagctttg
541gtggccagaa ccgaggccgc tcagactctg tggattatgg acagacacac tactatcacc
601aaagacagaa ctctgatgac aagctcaatg ggtggcagaa ctctcgggat tctgggattt
661gcatcaatgc ctccaactgg caggacaaaa gcatggggtg tgagaatggc catgtgcccc
721tctactcctc ctcatctgtc cccaccacaa tcaatacgat tggaaccagc acaagtacaa
781atgttccagc ctggctgaaa agcctccgcc tgcacaaata tgccgcgctt ttctcccaga
841tgacctatga ggagatgatg gccctcaccg agtgccagct ggaggcgcag aatgttacca
901aaggtgcaag acacaaaatt gtcatcagta ttcagaagct caaagaaaga caaaatctcc
961tgaagtcttt ggaaagggac atcatcgagg ggggcagcct gcgcatcccg ctccaggaac
1021tgcaccagat gatcctgact ccgatcaagg cctacagctc cccgagcacc acccccgagg
1081ctcgccgccg ggagccccag gccccgcgtc agccctcact gatgggcccc gagagccaga
1141gccccgactg caaagatggg gccgcagcca ctggcgccac ggccaccccc tcggccgggg
1201ccagcggggg gctccagccg caccagctga gcagctgcga tggggagctg gccgtcgccc
1261ccctgccaga gggggacctc cccgggcagt tcacacgcgt catggggaaa gtgtgcacac
1321agctcttggt ctccagacct gatgaggaaa atataagttc ctatttacag ctcatagaca
1381agtgtctaat tcatgaggca tttacagaga cacagaaaaa aagattgttg tcatggaaac
1441agcaggtgca gaagctcttt cggtctttcc ctcggaaaac ccttctagac atatcaggat
1501atcgacagca aagaaatcga ggctttgggc aatccaactc cctcccgacg gctggctctg
1561tgggcggtgg catgggcaga cggaacccgc gccagtacca gatcccctct cggaacgtcc
1621cttccgcccg cctgggcctc ttgggcacca gtggattcgt cagctccaac cagcgcaaca
1681ccacagctac ccccaccatc atgaaacaag gaagacagaa cctgtggttt gccaaccccg
1741ggggcagcaa tagcatgcca agccgcaccc acagctcagt ccagaggacc cgctcgctgc
1801ccgtgcacac ttccccacag aacatgctga tgttccagca gccagaattc cagcttcccg
1861tgaccgaacc tgacatcaac aacaggctgg agtcgttgtg cctcagtatg accgaacacg
1921ccctgggaga cggggttgac cggacctcca ccatcttgcc aactttcttg tacaaagtgg
1981ttggtaagcc tatccctaac cctctcctcg gtctcgattc tacgtagtaa tgagctagcg
2041ctaaccggtg gcgcgttaag tcgacaatca acctctggat ta

Download FASTA (ORF) (Full)

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