Construct: ORF ccsbBroad304_13667
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014344.1_s304c1, BRDN0000410691
- Derived from:
- ccsbBroadEn_13667
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF321P (399669)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_13667
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 100529240 | ZNF816-ZNF321P | ZNF816-ZNF321P readthrough | NM_001202473.1 | 10.5% | 4.7% | 1_622del;699_700ins31 |
| 2 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_018260.2 | 6.8% | 4% | (many diffs) |
| 3 | human | 55762 | ZNF701 | zinc finger protein 701 | NM_001172655.1 | 5.9% | 3.5% | (many diffs) |
| 4 | human | 55762 | ZNF701 | zinc finger protein 701 | XM_011527092.1 | 5.9% | 3.5% | (many diffs) |
| 5 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161501.1 | 5% | 2.9% | (many diffs) |
| 6 | human | 399669 | ZNF321P | zinc finger protein 321, ps... | NR_037805.1 | 4.6% | 1_486del;595_2334del | |
| 7 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161499.2 | 4.5% | 2.6% | (many diffs) |
| 8 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_001161500.1 | 4.5% | 2.6% | (many diffs) |
| 9 | human | 81856 | ZNF611 | zinc finger protein 611 | NM_030972.3 | 4.5% | 2.6% | (many diffs) |
| 10 | human | 388561 | ZNF761 | zinc finger protein 761 | NM_001289952.1 | 4.2% | 2.6% | (many diffs) |
| 11 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001363550.1 | 3.8% | 2.2% | (many diffs) |
| 12 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_005258909.4 | 3.8% | 2.2% | (many diffs) |
| 13 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451509.1 | 3.8% | 2.2% | (many diffs) |
| 14 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001039886.4 | 3.5% | 2% | (many diffs) |
| 15 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001321424.1 | 3.5% | 2% | (many diffs) |
| 16 | human | 388558 | ZNF808 | zinc finger protein 808 | NM_001321425.1 | 3.5% | 2% | (many diffs) |
| 17 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451506.1 | 3.5% | 2% | (many diffs) |
| 18 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451507.1 | 3.5% | 2% | (many diffs) |
| 19 | human | 388558 | ZNF808 | zinc finger protein 808 | XM_024451508.1 | 3.5% | 2% | (many diffs) |
| 20 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753718.2 | 3.1% | (many diffs) | |
| 21 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753717.2 | 2.6% | (many diffs) | |
| 22 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753715.2 | 2.6% | (many diffs) | |
| 23 | human | 79986 | ZNF702P | zinc finger protein 702, ps... | NR_003578.1 | 2.5% | (many diffs) | |
| 24 | human | 55762 | ZNF701 | zinc finger protein 701 | XR_001753716.2 | 2.5% | (many diffs) | |
| 25 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_935832.3 | 2.2% | (many diffs) | |
| 26 | human | 388558 | ZNF808 | zinc finger protein 808 | XR_002958314.1 | 2.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 174
- ORF length:
- 108
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatggg aataattccc tccattcttc attacccata caaaaattgg gaagtacaca 121 tgagagaaaa atctttccaa tgtaatgaga gtggcaaatc ctttaattat agctacccaa 181 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 241 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta