Construct: ORF ccsbBroadEn_01884

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006272.1_s300c1, BRDN0000456639
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PICALM (8301)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8301 PICALM phosphatidylinositol bindin... NM_001008660.3 100% 100%
2 human 8301 PICALM phosphatidylinositol bindin... XM_005274336.3 99.1% 99.1% 1365_1366insGGCTTTGATGAACTA
3 human 8301 PICALM phosphatidylinositol bindin... XM_017018383.2 98.6% 98.6% 1629_1630ins24
4 human 8301 PICALM phosphatidylinositol bindin... XM_017018384.2 97.8% 97.8% 1365_1366insGGCTTTGATGAACTA;1614_1615ins24
5 human 8301 PICALM phosphatidylinositol bindin... XM_005274330.3 95.7% 95.2% (many diffs)
6 human 8301 PICALM phosphatidylinositol bindin... XM_017018386.2 95.4% 95.4% 1629_1630ins84
7 human 8301 PICALM phosphatidylinositol bindin... XM_005274332.3 94.9% 94.4% (many diffs)
8 human 8301 PICALM phosphatidylinositol bindin... XM_017018387.2 94.5% 94.5% 1365_1366insGGCTTTGATGAACTA;1614_1615ins84
9 human 8301 PICALM phosphatidylinositol bindin... XM_005274333.3 94.4% 94% (many diffs)
10 human 8301 PICALM phosphatidylinositol bindin... XM_017018388.2 94% 94% 1257_1258ins108
11 human 8301 PICALM phosphatidylinositol bindin... XM_005274335.3 93.7% 93.2% (many diffs)
12 human 8301 PICALM phosphatidylinositol bindin... XM_024448700.1 93.4% 93.4% 1258_1386del
13 human 8301 PICALM phosphatidylinositol bindin... XM_017018381.2 92.6% 92.6% 1258_1386del;1494_1495insGGCTTTGATGAACTA
14 human 8301 PICALM phosphatidylinositol bindin... XM_005274326.3 92.4% 92.4% 1258_1407del
15 human 8301 PICALM phosphatidylinositol bindin... NM_001206946.2 92.1% 92.1% 1258_1386del;1758_1759ins24
16 human 8301 PICALM phosphatidylinositol bindin... XM_005274328.3 91.6% 91.6% 1258_1407del;1515_1516insGGCTTTGATGAACTA
17 human 8301 PICALM phosphatidylinositol bindin... XM_017018382.2 91.3% 90.8% (many diffs)
18 human 8301 PICALM phosphatidylinositol bindin... NM_007166.4 91.2% 91.2% 1258_1407del;1779_1780ins24
19 human 8301 PICALM phosphatidylinositol bindin... XM_005274329.4 90.4% 90.4% 1258_1407del;1515_1516insGGCTTTGATGAACTA;1764_1765ins24
20 human 8301 PICALM phosphatidylinositol bindin... NM_001206947.2 90.3% 90.3% 0_1ins153;1476_1477ins24
21 human 8301 PICALM phosphatidylinositol bindin... XM_011545293.2 90% 89.6% (many diffs)
22 human 8301 PICALM phosphatidylinositol bindin... XM_006718699.3 89.6% 89.2% (many diffs)
23 human 8301 PICALM phosphatidylinositol bindin... XM_005274340.3 89.5% 89.1% (many diffs)
24 human 8301 PICALM phosphatidylinositol bindin... XM_006718700.3 88.9% 88.5% (many diffs)
25 human 8301 PICALM phosphatidylinositol bindin... XM_005274322.3 88.7% 88.3% (many diffs)
26 human 8301 PICALM phosphatidylinositol bindin... XM_006718701.4 88.5% 88% (many diffs)
27 human 8301 PICALM phosphatidylinositol bindin... XM_005274331.3 88.1% 88.1% 1258_1407del;1779_1780ins84
28 human 8301 PICALM phosphatidylinositol bindin... XM_005274323.3 88% 87.6% (many diffs)
29 human 8301 PICALM phosphatidylinositol bindin... XM_005274324.3 87.6% 87.1% (many diffs)
30 human 8301 PICALM phosphatidylinositol bindin... XM_005274334.3 87.4% 87.4% 1258_1407del;1515_1516insGGCTTTGATGAACTA;1764_1765ins84
31 human 8301 PICALM phosphatidylinositol bindin... XM_005274325.3 86.8% 86.4% (many diffs)
32 human 8301 PICALM phosphatidylinositol bindin... XM_005274327.3 84.6% 84.2% (many diffs)
33 human 8301 PICALM phosphatidylinositol bindin... XM_005274337.3 82.7% 82.4% (many diffs)
34 human 8301 PICALM phosphatidylinositol bindin... XM_017018385.2 82% 81.6% (many diffs)
35 mouse 233489 Picalm phosphatidylinositol bindin... NM_001252522.1 94.4% 98.1% (many diffs)
36 mouse 233489 Picalm phosphatidylinositol bindin... NM_001252523.1 93.6% 97.3% (many diffs)
37 mouse 233489 Picalm phosphatidylinositol bindin... NM_001252524.1 92.2% 96% (many diffs)
38 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507602.3 90.3% 93.5% (many diffs)
39 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507603.3 89.5% 92.7% (many diffs)
40 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507604.3 89% 92.2% (many diffs)
41 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507605.3 88.3% 91.5% (many diffs)
42 mouse 233489 Picalm phosphatidylinositol bindin... NM_146194.4 87.2% 90.7% (many diffs)
43 mouse 233489 Picalm phosphatidylinositol bindin... NM_001252520.1 86.5% 90% (many diffs)
44 mouse 233489 Picalm phosphatidylinositol bindin... NM_001252521.1 86% 89.5% (many diffs)
45 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507601.3 85.3% 88.7% (many diffs)
46 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507596.3 84.6% 87.6% (many diffs)
47 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507594.3 83.7% 86.7% (many diffs)
48 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507599.3 83.4% 86.4% (many diffs)
49 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507595.3 83% 86% (many diffs)
50 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507600.3 82.7% 85.7% (many diffs)
51 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507597.3 82.6% 85.5% (many diffs)
52 mouse 233489 Picalm phosphatidylinositol bindin... XM_006507598.3 81.8% 84.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1899
ORF length:
1830
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCCGGCCAG AGCCTGACGG ACCGAATCAC TGCCGCCCAG CACAGTGTCA
121CCGGCTCTGC CGTATCCAAG ACAGTATGCA AGGCCACGAC CCACGAGATC ATGGGGCCCA
181AGAAAAAGCA CCTGGACTAC TTAATTCAGT GCACAAATGA GATGAATGTG AACATCCCAC
241AGTTGGCAGA CAGTTTATTT GAAAGAACTA CTAATAGTAG TTGGGTGGTG GTCTTCAAAT
301CTCTCATTAC AACTCATCAT TTGATGGTGT ATGGAAATGA GCGTTTTATT CAGTATTTGG
361CTTCAAGAAA CACGTTGTTT AACTTAAGCA ATTTTTTGGA TAAAAGTGGA TTGCAAGGAT
421ATGACATGTC TACATTTATT AGGCGGTATA GTAGATATTT AAATGAGAAA GCAGTTTCAT
481ACAGACAAGT TGCATTTGAT TTCACAAAAG TGAAGAGAGG GGCTGATGGA GTTATGAGAA
541CAATGAACAC AGAAAAACTC CTAAAAACTG TACCAATTAT TCAGAATCAG ATGGATGCAC
601TTCTTGATTT TAATGTTAAT AGCAATGAAC TTACAAATGG GGTAATAAAT GCTGCCTTCA
661TGCTCCTGTT CAAAGATGCC ATTAGACTGT TTGCAGCATA CAATGAAGGA ATTATTAATT
721TGTTGGAAAA ATATTTTGAT ATGAAAAAGA ACCAATGCAA AGAAGGTCTT GACATCTATA
781AGAAGTTCCT AACTAGGATG ACAAGAATCT CAGAGTTCCT CAAAGTTGCA GAGCAAGTTG
841GAATTGACAG AGGTGATATA CCAGACCTTT CACAGGCCCC TAGCAGTCTT CTTGATGCTT
901TGGAACAACA TTTAGCTTCC TTGGAAGGAA AGAAAATCAA AGATTCTACA GCTGCAAGCA
961GGGCAACTAC ACTTTCCAAT GCAGTGTCTT CCCTGGCAAG CACTGGTCTA TCTCTGACCA
1021AAGTGGATGA AAGGGAAAAG CAGGCAGCAT TAGAGGAAGA ACAGGCACGT TTGAAAGCTT
1081TAAAGGAACA GCGCCTAAAA GAACTTGCAA AGAAACCTCA TACCTCTTTA ACAACTGCAG
1141CCTCTCCTGT ATCCACCTCA GCAGGAGGGA TAATGACTGC ACCAGCCATT GACATATTTT
1201CTACCCCTAG TTCTTCTAAC AGCACATCAA AGCTGCCCAA TGATCTGCTT GATTTGCAGC
1261AGCCAACTTT TCACCCATCT GTACATCCTA TGTCAACTGC TTCTCAGGTA GCAAGTACAT
1321GGGGAGGATT CACTCCTTCT CCAGTTGCAC AGCCACACCC TTCAGCTGGC CTTAATGTTG
1381ACTTTGAATC TGTGTTTGGA AATAAATCTA CAAATGTTAT TGTAGATTCT GGGGGCTTTG
1441ATGAACTAGG TGGACTTCTC AAACCAACAG TGGCCTCTCA GAACCAGAAC CTTCCTGTTG
1501CCAAACTCCC ACCTAGCAAG TTAGTATCTG ATGACTTGGA TTCATCTTTA GCCAACCTTG
1561TGGGCAATCT TGGCATCGGA AATGGAACCA CTAAGAATGA TGTAAATTGG AGTCAACCAG
1621GTGAAAAGAA GTTAACTGGG GGATCTAACT GGCAACCAAA GGTTGCACCA ACAACCGCTT
1681GGAATGCTGC AACAATGAAT GGCATGCATT TTCCACAATA CGCACCCCCT GTAATGGCCT
1741ATCCTGCTAC TACACCAACA GGCATGATAG GATATGGAAT TCCTCCACAA ATGGGAAGTG
1801TTCCTGTAAT GACGCAACCA ACCTTAATAT ACAGCCAGCC TGTCATGAGA CCTCCAAACC
1861CCTTTGGCCC TGTATCAGGA GCACAGATAC AGTTTATGTT GCCAACTTTC TTGTACAAAG
1921TTGGcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)