Construct: ORF ccsbBroadEn_06792

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005029.1_s300c1, BRDN0000394062
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSG9 (5678)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5678 PSG9 pregnancy specific beta-1-g... NM_002784.5 99.9% 99.7% 938G>A
2 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027007.2 95.9% 95.6% (many diffs)
3 human 5675 PSG6 pregnancy specific beta-1-g... NM_001031850.4 93.6% 87.7% (many diffs)
4 human 5671 PSG3 pregnancy specific beta-1-g... NM_021016.4 91.9% 83.7% (many diffs)
5 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130167.2 91.5% 83.4% (many diffs)
6 human 440533 PSG8 pregnancy specific beta-1-g... NM_182707.3 90.9% 83.6% (many diffs)
7 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184825.2 90.9% 81.8% (many diffs)
8 human 5672 PSG4 pregnancy specific beta-1-g... XM_017026997.2 90.8% 83.6% (many diffs)
9 human 5669 PSG1 pregnancy specific beta-1-g... NM_006905.3 90.7% 82% (many diffs)
10 human 5672 PSG4 pregnancy specific beta-1-g... NM_002780.5 90.7% 83.4% (many diffs)
11 human 5676 PSG7 pregnancy specific beta-1-g... NM_002783.3 90.6% 82.9% (many diffs)
12 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184826.2 90.3% 82.1% (many diffs)
13 human 5675 PSG6 pregnancy specific beta-1-g... NM_002782.5 90.2% 84.1% (many diffs)
14 human 5669 PSG1 pregnancy specific beta-1-g... NM_001297773.2 89.4% 80.9% (many diffs)
15 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027004.2 85.3% 83.3% (many diffs)
16 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301708.2 78.1% 77.9% 709_710ins279
17 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301707.2 78% 77.6% 430_431ins279;659G>A
18 human 5673 PSG5 pregnancy specific beta-1-g... NM_001130014.2 71% 63.1% (many diffs)
19 human 5673 PSG5 pregnancy specific beta-1-g... NM_002781.4 71% 63.1% (many diffs)
20 human 5673 PSG5 pregnancy specific beta-1-g... XM_017027003.1 71% 63.1% (many diffs)
21 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526986.1 71% 63.6% (many diffs)
22 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027001.2 70.7% 64.3% (many diffs)
23 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027002.2 70.7% 64.1% (many diffs)
24 human 5669 PSG1 pregnancy specific beta-1-g... XM_005259065.4 70.6% 63.1% (many diffs)
25 human 5669 PSG1 pregnancy specific beta-1-g... NM_001330524.2 70.6% 62.9% (many diffs)
26 human 5672 PSG4 pregnancy specific beta-1-g... NM_001276495.1 70.4% 64.1% (many diffs)
27 human 5672 PSG4 pregnancy specific beta-1-g... NM_213633.3 70.4% 63.8% (many diffs)
28 human 5669 PSG1 pregnancy specific beta-1-g... XM_011527125.2 70.1% 61.7% (many diffs)
29 human 5670 PSG2 pregnancy specific beta-1-g... NM_031246.4 70.1% 61.6% (many diffs)
30 human 5680 PSG11 pregnancy specific beta-1-g... NM_002785.3 69.2% 60.6% (many diffs)
31 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527126.2 67.7% 60.3% (many diffs)
32 human 5678 PSG9 pregnancy specific beta-1-g... XM_005259075.4 66.6% 64.6% (many diffs)
33 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027005.2 66.5% 64.4% (many diffs)
34 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130168.2 65.3% 59.6% (many diffs)
35 human 5672 PSG4 pregnancy specific beta-1-g... NM_001316339.2 64.6% 59.6% (many diffs)
36 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526987.3 64.6% 56.7% (many diffs)
37 human 5676 PSG7 pregnancy specific beta-1-g... NM_001206650.2 64.6% 59.2% (many diffs)
38 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526988.2 56.6% 51.9% (many diffs)
39 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301709.2 56.3% 56.3% 428_429ins558
40 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527127.2 50.9% 45.9% (many diffs)
41 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027006.2 47.8% 46.1% (many diffs)
42 human 653492 PSG10P pregnancy specific beta-1-g... NR_026824.1 45.4% (many diffs)
43 human 5680 PSG11 pregnancy specific beta-1-g... NM_001113410.2 43.4% 36.8% (many diffs)
44 human 5680 PSG11 pregnancy specific beta-1-g... NM_203287.2 43.4% 36.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1344
ORF length:
1278
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GCCCCTCCCA GCCCCTTCCT GCACACAGCG CATCACCTGG AAGGGGCTCC
121TGCTCACAGC ATCACTTTTA AACTTCTGGA ACCCGCCCAC CACTGCCGAA GTCACGATTG
181AAGCCCAGCC ACCCAAAGTT TCTGAGGGGA AGGATGTTCT TCTACTTGTC CACAATTTGC
241CCCAGAATCT TCCTGGCTAC TTCTGGTACA AAGGGGAAAT GACGGACCTC TACCATTACA
301TTATATCGTA TATAGTTGAT GGTAAAATAA TTATATATGG GCCTGCATAC AGTGGAAGAG
361AAACAGTATA TTCCAACGCA TCCCTGCTGA TCCAGAATGT CACCCGGAAG GATGCAGGAA
421CCTACACCTT ACACATCATA AAGCGAGGTG ATGAGACTAG AGAAGAAATT CGACATTTCA
481CCTTCACCTT ATACTTGGAG ACTCCCAAGC CCTACATCTC CAGCAGCAAC TTAAACCCCA
541GGGAGGCCAT GGAGGCTGTG CGCTTAATCT GTGATCCTGA GACTCTGGAC GCAAGCTACC
601TATGGTGGAT GAATGGTCAG AGCCTCCCTG TGACTCACAG GTTGCAGCTG TCCAAAACCA
661ACAGGACCCT CTATCTATTT GGTGTCACAA AGTATATTGC AGGACCCTAT GAATGTGAAA
721TACGGAACCC AGTGAGTGCC AGTCGCAGTG ACCCAGTCAC CCTGAATCTC CTCCCGAAGC
781TGCCCATCCC CTACATCACC ATCAACAACT TAAACCCCAG GGAGAATAAG GATGTCTTAG
841CCTTCACCTG TGAACCTAAG AGTGAGAACT ACACCTACAT TTGGTGGCTA AACGGTCAGA
901GCCTCCCCGT CAGTCCCGGG GTAAAGCGAC CCATTGAAAA CAGGATACTC ATTCTACCCA
961GTGTCACGAG AAATGAAACA GGACCCTATC AATGTGAAAT ACAGGACCGA TATGGTGGCC
1021TCCGCAGTAA CCCAGTCATC CTAAATGTCC TCTATGGTCC AGACCTCCCC AGAATTTACC
1081CTTCATTCAC CTATTACCGT TCAGGAGAAA ACCTCGACTT GTCCTGCTTC ACGGAATCTA
1141ACCCACCGGC AGAGTATTTT TGGACAATTA ATGGGAAGTT TCAGCAATCA GGACAAAAGC
1201TCTTTATCCC CCAAATTACT AGAAATCATA GCGGGCTCTA TGCTTGCTCT GTTCATAACT
1261CAGCCACTGG CAAGGAAATC TCCAAATCCA TGACAGTCAA AGTCTCTGGT CCCTGCCATG
1321GAGACCTGAC AGAGTCTCAG TCATGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1381agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)