Construct: ORF ccsbBroadEn_06793
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016590.1_s300c1, BRDN0000390145
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PSG11 (5680)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 5680 | PSG11 | pregnancy specific beta-1-g... | NM_001113410.2 | 96.9% | 96.8% | 0_1insATGCACGCAGCAGAGATC;424A>G;504G>A |
| 2 | human | 5680 | PSG11 | pregnancy specific beta-1-g... | NM_203287.2 | 96.9% | 96.8% | 0_1insATGCACGCAGCAGAGATC;424A>G;504G>A |
| 3 | human | 5680 | PSG11 | pregnancy specific beta-1-g... | NM_002785.3 | 62.2% | 61.8% | (many diffs) |
| 4 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_001316339.2 | 59.8% | 52.6% | (many diffs) |
| 5 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | NM_001130168.2 | 58.7% | 53.3% | (many diffs) |
| 6 | human | 5676 | PSG7 | pregnancy specific beta-1-g... | NM_001206650.2 | 58.3% | 54.2% | (many diffs) |
| 7 | human | 5670 | PSG2 | pregnancy specific beta-1-g... | NM_031246.4 | 57.8% | 53% | (many diffs) |
| 8 | human | 5671 | PSG3 | pregnancy specific beta-1-g... | XM_011527126.2 | 55.6% | 49.2% | (many diffs) |
| 9 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | XM_011526987.3 | 55.5% | 49.5% | (many diffs) |
| 10 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_213633.3 | 54.7% | 48.2% | (many diffs) |
| 11 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_001301708.2 | 54.7% | 46.3% | (many diffs) |
| 12 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | XM_017027002.2 | 54.2% | 47.9% | (many diffs) |
| 13 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | XM_011527125.2 | 53.8% | 48.1% | (many diffs) |
| 14 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | XM_011526986.1 | 53.8% | 48.8% | (many diffs) |
| 15 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | XM_011526988.2 | 47% | 42.5% | (many diffs) |
| 16 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_005259075.4 | 46.5% | 39.2% | (many diffs) |
| 17 | human | 5675 | PSG6 | pregnancy specific beta-1-g... | NM_002782.5 | 44.6% | 38% | (many diffs) |
| 18 | human | 5671 | PSG3 | pregnancy specific beta-1-g... | NM_021016.4 | 44.6% | 39.6% | (many diffs) |
| 19 | human | 5675 | PSG6 | pregnancy specific beta-1-g... | NM_001031850.4 | 44.5% | 38% | (many diffs) |
| 20 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | NM_182707.3 | 43.8% | 38.4% | (many diffs) |
| 21 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027007.2 | 43.2% | 36.5% | (many diffs) |
| 22 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | NM_002780.5 | 43% | 37.7% | (many diffs) |
| 23 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | NM_002784.5 | 43% | 36.3% | (many diffs) |
| 24 | human | 5672 | PSG4 | pregnancy specific beta-1-g... | XM_017026997.2 | 42.7% | 37.5% | (many diffs) |
| 25 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001297773.2 | 42.7% | 37.7% | (many diffs) |
| 26 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_006905.3 | 42.5% | 37.6% | (many diffs) |
| 27 | human | 440533 | PSG8 | pregnancy specific beta-1-g... | NM_001130167.2 | 42.3% | 38.2% | (many diffs) |
| 28 | human | 5676 | PSG7 | pregnancy specific beta-1-g... | NM_002783.3 | 42.1% | 38.9% | (many diffs) |
| 29 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001184826.2 | 42.1% | 37.3% | (many diffs) |
| 30 | human | 5669 | PSG1 | pregnancy specific beta-1-g... | NM_001184825.2 | 41.8% | 37.2% | (many diffs) |
| 31 | human | 5678 | PSG9 | pregnancy specific beta-1-g... | XM_017027004.2 | 37.9% | 31.7% | (many diffs) |
| 32 | human | 5671 | PSG3 | pregnancy specific beta-1-g... | XM_011527127.2 | 34.2% | 29.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 723
- ORF length:
- 657
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA CGCAGCAGAG ATCATGGGGC CCCTCTCAGC CCCTCCCTGC ACAGAGCACA 121 TCAAATGGAA GGGGCTCCTG CTCACAGTGG AGACTCCCAA GCCCTCCATC TCCAGCAGCA 181 ACTTAAACCC CAGGGAGGCC ATGGAGACTG TGATCTTAAC CTGTAATCCT GAGACTCCGG 241 ACGCAAGCTA CCTGTGGTGG ATGAATGGTC AGAGCCTCCC TATGACTCAT AGGATGCAGC 301 TGTCTGAAAC CAACAGGACC CTCTTTCTAT TTGGTGTCAC AAAGTATACT GCAGGACCCT 361 ATGAATGTGA AATATGGAAC TCAGGGAGTG CCAGCCGCAG TGACCCAGTC ACCCTGAATC 421 TCCTCCATGG TCCAGACCTC CCCAGAATTT TCCCTTCAGT CACCTCTTAC TATTCAGGAG 481 AGAACCTCGA CTTGTCCTGC TTCGCAGACT CTAACCCACC AGCACAGTAT TCTTGGACAA 541 TTAATGGGAA GTTTCAGCTA TCAGGACAAA AGCTCTTTAT CCCTCAAATT ACTCCAAAGC 601 ATAATGGGCT CTATGCTTGC TCTGCTCGTA ACTCAGCCAC TGGCGAGGAA AGCTCCACAT 661 CCTTGACAAT CAGAGTCATT GCTCCTCCAG GATTAGGAAC TTTTGCTTTC AATAATCCAA 721 CGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 781 gcaacgaac