Construct: ORF ccsbBroadEn_06793

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016590.1_s300c1, BRDN0000390145
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSG11 (5680)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5680 PSG11 pregnancy specific beta-1-g... NM_001113410.2 96.9% 96.8% 0_1insATGCACGCAGCAGAGATC;424A>G;504G>A
2 human 5680 PSG11 pregnancy specific beta-1-g... NM_203287.2 96.9% 96.8% 0_1insATGCACGCAGCAGAGATC;424A>G;504G>A
3 human 5680 PSG11 pregnancy specific beta-1-g... NM_002785.3 62.2% 61.8% (many diffs)
4 human 5672 PSG4 pregnancy specific beta-1-g... NM_001316339.2 59.8% 52.6% (many diffs)
5 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130168.2 58.7% 53.3% (many diffs)
6 human 5676 PSG7 pregnancy specific beta-1-g... NM_001206650.2 58.3% 54.2% (many diffs)
7 human 5670 PSG2 pregnancy specific beta-1-g... NM_031246.4 57.8% 53% (many diffs)
8 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527126.2 55.6% 49.2% (many diffs)
9 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526987.3 55.5% 49.5% (many diffs)
10 human 5672 PSG4 pregnancy specific beta-1-g... NM_213633.3 54.7% 48.2% (many diffs)
11 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301708.2 54.7% 46.3% (many diffs)
12 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027002.2 54.2% 47.9% (many diffs)
13 human 5669 PSG1 pregnancy specific beta-1-g... XM_011527125.2 53.8% 48.1% (many diffs)
14 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526986.1 53.8% 48.8% (many diffs)
15 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526988.2 47% 42.5% (many diffs)
16 human 5678 PSG9 pregnancy specific beta-1-g... XM_005259075.4 46.5% 39.2% (many diffs)
17 human 5675 PSG6 pregnancy specific beta-1-g... NM_002782.5 44.6% 38% (many diffs)
18 human 5671 PSG3 pregnancy specific beta-1-g... NM_021016.4 44.6% 39.6% (many diffs)
19 human 5675 PSG6 pregnancy specific beta-1-g... NM_001031850.4 44.5% 38% (many diffs)
20 human 440533 PSG8 pregnancy specific beta-1-g... NM_182707.3 43.8% 38.4% (many diffs)
21 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027007.2 43.2% 36.5% (many diffs)
22 human 5672 PSG4 pregnancy specific beta-1-g... NM_002780.5 43% 37.7% (many diffs)
23 human 5678 PSG9 pregnancy specific beta-1-g... NM_002784.5 43% 36.3% (many diffs)
24 human 5672 PSG4 pregnancy specific beta-1-g... XM_017026997.2 42.7% 37.5% (many diffs)
25 human 5669 PSG1 pregnancy specific beta-1-g... NM_001297773.2 42.7% 37.7% (many diffs)
26 human 5669 PSG1 pregnancy specific beta-1-g... NM_006905.3 42.5% 37.6% (many diffs)
27 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130167.2 42.3% 38.2% (many diffs)
28 human 5676 PSG7 pregnancy specific beta-1-g... NM_002783.3 42.1% 38.9% (many diffs)
29 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184826.2 42.1% 37.3% (many diffs)
30 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184825.2 41.8% 37.2% (many diffs)
31 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027004.2 37.9% 31.7% (many diffs)
32 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527127.2 34.2% 29.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
723
ORF length:
657
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA CGCAGCAGAG ATCATGGGGC CCCTCTCAGC CCCTCCCTGC ACAGAGCACA
121TCAAATGGAA GGGGCTCCTG CTCACAGTGG AGACTCCCAA GCCCTCCATC TCCAGCAGCA
181ACTTAAACCC CAGGGAGGCC ATGGAGACTG TGATCTTAAC CTGTAATCCT GAGACTCCGG
241ACGCAAGCTA CCTGTGGTGG ATGAATGGTC AGAGCCTCCC TATGACTCAT AGGATGCAGC
301TGTCTGAAAC CAACAGGACC CTCTTTCTAT TTGGTGTCAC AAAGTATACT GCAGGACCCT
361ATGAATGTGA AATATGGAAC TCAGGGAGTG CCAGCCGCAG TGACCCAGTC ACCCTGAATC
421TCCTCCATGG TCCAGACCTC CCCAGAATTT TCCCTTCAGT CACCTCTTAC TATTCAGGAG
481AGAACCTCGA CTTGTCCTGC TTCGCAGACT CTAACCCACC AGCACAGTAT TCTTGGACAA
541TTAATGGGAA GTTTCAGCTA TCAGGACAAA AGCTCTTTAT CCCTCAAATT ACTCCAAAGC
601ATAATGGGCT CTATGCTTGC TCTGCTCGTA ACTCAGCCAC TGGCGAGGAA AGCTCCACAT
661CCTTGACAAT CAGAGTCATT GCTCCTCCAG GATTAGGAAC TTTTGCTTTC AATAATCCAA
721CGTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt
781gcaacgaac

Download FASTA (ORF) (Full)