Construct: ORF ccsbBroadEn_07167
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015296.1_s300c1, BRDN0000394375
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF155 (7711)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260486.1 | 99.8% | 99.8% | 752G>A;1218A>G |
| 2 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260487.1 | 99.8% | 99.8% | 752G>A;1218A>G |
| 3 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_003445.3 | 99.8% | 99.8% | 752G>A;1218A>G |
| 4 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_198089.3 | 99.7% | 99.6% | (many diffs) |
| 5 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_005259215.4 | 99.7% | 99.6% | (many diffs) |
| 6 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260488.1 | 97.7% | 96.9% | (many diffs) |
| 7 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527278.3 | 97.6% | 96.7% | (many diffs) |
| 8 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527279.3 | 97.6% | 96.7% | (many diffs) |
| 9 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_017027248.2 | 97.6% | 96.7% | (many diffs) |
| 10 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_024451694.1 | 97.6% | 96.7% | (many diffs) |
| 11 | human | 7766 | ZNF223 | zinc finger protein 223 | NM_013361.6 | 78.6% | 71% | (many diffs) |
| 12 | human | 7766 | ZNF223 | zinc finger protein 223 | XM_017027258.1 | 78.6% | 71% | (many diffs) |
| 13 | human | 7766 | ZNF223 | zinc finger protein 223 | XM_017027259.1 | 78.6% | 71% | (many diffs) |
| 14 | human | 7773 | ZNF230 | zinc finger protein 230 | NM_006300.4 | 78.1% | 70.8% | (many diffs) |
| 15 | human | 7673 | ZNF222 | zinc finger protein 222 | XM_005259208.3 | 78.1% | 69.7% | (many diffs) |
| 16 | human | 7673 | ZNF222 | zinc finger protein 222 | NM_001129996.2 | 77.1% | 68.3% | (many diffs) |
| 17 | human | 342909 | ZNF284 | zinc finger protein 284 | NM_001037813.4 | 76.7% | 65.9% | (many diffs) |
| 18 | human | 342909 | ZNF284 | zinc finger protein 284 | XM_011526907.3 | 76.7% | 65.9% | (many diffs) |
| 19 | human | 342909 | ZNF284 | zinc finger protein 284 | XM_011526908.3 | 76.7% | 65.9% | (many diffs) |
| 20 | human | 342909 | ZNF284 | zinc finger protein 284 | XM_024451486.1 | 76.7% | 65.9% | (many diffs) |
| 21 | human | 7638 | ZNF221 | zinc finger protein 221 | NM_001297588.1 | 74.6% | 65.3% | (many diffs) |
| 22 | human | 7638 | ZNF221 | zinc finger protein 221 | NM_001297589.1 | 74.6% | 65.3% | (many diffs) |
| 23 | human | 7638 | ZNF221 | zinc finger protein 221 | NM_013359.2 | 74.6% | 65.3% | (many diffs) |
| 24 | human | 7638 | ZNF221 | zinc finger protein 221 | XM_017027232.2 | 74.6% | 65.3% | (many diffs) |
| 25 | human | 7673 | ZNF222 | zinc finger protein 222 | NM_013360.2 | 73% | 65% | (many diffs) |
| 26 | human | 7673 | ZNF222 | zinc finger protein 222 | XM_005259209.3 | 72% | 63.8% | (many diffs) |
| 27 | human | 7638 | ZNF221 | zinc finger protein 221 | XM_017027233.1 | 71.5% | 61.6% | (many diffs) |
| 28 | human | 7768 | ZNF225 | zinc finger protein 225 | NM_001321685.2 | 66.2% | 58.4% | (many diffs) |
| 29 | human | 7768 | ZNF225 | zinc finger protein 225 | NM_013362.4 | 66.2% | 58.4% | (many diffs) |
| 30 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_011527285.2 | 66.2% | 58.4% | (many diffs) |
| 31 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_011527286.2 | 66.2% | 58.4% | (many diffs) |
| 32 | human | 7767 | ZNF224 | zinc finger protein 224 | NM_001321645.2 | 64.4% | 57.5% | (many diffs) |
| 33 | human | 7767 | ZNF224 | zinc finger protein 224 | NM_013398.4 | 64.4% | 57.5% | (many diffs) |
| 34 | human | 7767 | ZNF224 | zinc finger protein 224 | XM_017027261.2 | 64.4% | 57.5% | (many diffs) |
| 35 | human | 7766 | ZNF223 | zinc finger protein 223 | XM_017027260.2 | 63.8% | 56.6% | (many diffs) |
| 36 | human | 7768 | ZNF225 | zinc finger protein 225 | XM_005259223.3 | 55.3% | 48.3% | (many diffs) |
| 37 | human | 7673 | ZNF222 | zinc finger protein 222 | XM_017027237.1 | 17.7% | 13.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1683
- ORF length:
- 1614
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GACCACATTC AAGGAGGCAG TGACCTTCAA GGATGTGGCT GTGGTCTTCA 121 CTGAGGAGGA GCTGGGGCTG CTGGACCCTG CCCAGAGGAA GCTGTACCGA GATGTGATGC 181 TGGAGAACTT CAGGAACCTG CTCTCAGTGG GGCATCAACC GTTCCACCAA GATACTTGCC 241 ACTTCCTAAG GGAAGAAAAG TTTTGGATGA TGGGGACAGC AACCCAAAGA GAAGGGAATT 301 CAGGAGGCAA GATCCAAACT GAGTTGGAGT CTGTTCCAGA AGCAGGAGCA CATGAAGAGT 361 GGTCCTGCCA GCAAATCTGG GAACAAATTG CAAAAGACTT AACCAGGTCT CAGGACTCTA 421 TCATAAATAA CTCTCAGTTC TTTGAAAATG GTGATGTCCC CTCCCAGGTT GAAGCAGGAC 481 TACCCACAAT TCATACAGGA CAGAAACCTT CCCAGGGTGG GAAGTGTAAA CAGTCCTTCA 541 GTGATGTTCC CATCTTTGAT CTTCCTCAGC AGTTATACTC AGAAGAGAAG TCTTATACAT 601 GTGATGAGTG TGGAAAAAGC ATCTGTTACA TCTCAGCTCT TCATGTTCAT CAGAGAGTCC 661 ACGTGGGAGA GAAACTCTTT ATGTGTGATG TGTGTGGCAA GGAATTTAGT CAAAGCTCAC 721 ATCTGCAAAC TCATCAGAGA GTCCACACTG GAGAGAAACC ATTCAAATGT GAGCAATGTG 781 GGAAAGGTTT CAGTCGTAGA TCAGCACTTA ATGTTCATCA TAAATTACAC ACAGGAGAGA 841 AACCTTACAT TTGTGAGGCA TGTGGGAAGG CCTTCATTCA TGATTCCCAG CTTAAGGAAC 901 ATAAGAGAAT CCATACTGGG GAGAAACCAT TCAAATGTGA TATATGTGGT AAGACCTTCT 961 ATTTTAGGTC AAGACTTAAG AGCCATTCCA TGGTTCACAC AGGAGAAAAA CCATTTAGGT 1021 GTGATACATG TGATAAGAGC TTTCATCAGA GATCAGCACT TAATAGGCAT TGCATGGTCC 1081 ACACAGGAGA GAAACCGTAC AGATGTGAGC AGTGTGGAAA AGGCTTTATT GGTAGGCTAG 1141 ATTTTTATAA GCATCAGGTG GTCCACACAG GAGAGAAACC ATATAATTGT AAAGAATGTG 1201 GGAAGAGCTT CAGATGGTCC TCATGCCTTT TGAACCATCA GCGAGTCCAC AGTGGAGAAA 1261 AAAGCTTCAA ATGTGAAGAA TGTGGGAAGG GATTTTATAC AAATTCACAA CTGTCTTCCC 1321 ATCAGAGATC CCACAGTGGT GAAAAGCCAT ATAAATGTGA GGAGTGTGGG AAGGGCTATG 1381 TTACTAAGTT TAATCTTGAC TTGCACCAGA GGGTCCACAC GGGAGAGAGA CCTTATAATT 1441 GTAAGGAATG TGGGAAGAAC TTTAGCCGGG CCTCAAGTAT TTTGAATCAT AAGAGACTCC 1501 ACTGCCAGAA AAAACCATTC AAATGTGAGG ACTGTGGAAA GAGGCTTGTA CACAGGACAT 1561 ACCGTAAAGA CCAGCCGAGA GACTATAGTG GGGAAAACCC ATCCAAATGT GAGGATTGTG 1621 GGAGACGCTA CAAGAGGCGC TTGAATCTGG ATATACTTTT ATCATTATTT CTAAATGACA 1681 CATTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1741 gcaacgaac