Construct: ORF ccsbBroadEn_07176
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001756.1_s300c1, BRDN0000392867
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF223 (7766)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7766 | ZNF223 | zinc finger protein 223 | NM_013361.6 | 99.7% | 99.7% | (many diffs) |
| 2 | human | 7766 | ZNF223 | zinc finger protein 223 | XM_017027258.1 | 99.7% | 99.7% | (many diffs) |
| 3 | human | 7766 | ZNF223 | zinc finger protein 223 | XM_017027259.1 | 99.7% | 99.7% | (many diffs) |
| 4 | human | 7673 | ZNF222 | zinc finger protein 222 | XM_005259208.3 | 86.7% | 78% | (many diffs) |
| 5 | human | 7773 | ZNF230 | zinc finger protein 230 | NM_006300.4 | 85.9% | 78% | (many diffs) |
| 6 | human | 7673 | ZNF222 | zinc finger protein 222 | NM_001129996.2 | 85.8% | 76.5% | (many diffs) |
| 7 | human | 7766 | ZNF223 | zinc finger protein 223 | XM_017027260.2 | 82.1% | 82.1% | (many diffs) |
| 8 | human | 7673 | ZNF222 | zinc finger protein 222 | NM_013360.2 | 81.1% | 73.1% | (many diffs) |
| 9 | human | 7673 | ZNF222 | zinc finger protein 222 | XM_005259209.3 | 80.3% | 71.6% | (many diffs) |
| 10 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260486.1 | 78.6% | 70.8% | (many diffs) |
| 11 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260487.1 | 78.6% | 70.8% | (many diffs) |
| 12 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_003445.3 | 78.6% | 70.8% | (many diffs) |
| 13 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_198089.3 | 78.5% | 70.6% | (many diffs) |
| 14 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_005259215.4 | 78.5% | 70.6% | (many diffs) |
| 15 | human | 7711 | ZNF155 | zinc finger protein 155 | NM_001260488.1 | 76.7% | 68.8% | (many diffs) |
| 16 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527278.3 | 76.6% | 68.6% | (many diffs) |
| 17 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_011527279.3 | 76.6% | 68.6% | (many diffs) |
| 18 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_017027248.2 | 76.6% | 68.6% | (many diffs) |
| 19 | human | 7711 | ZNF155 | zinc finger protein 155 | XM_024451694.1 | 76.6% | 68.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1512
- ORF length:
- 1446
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CATGTCCAAG GAGGCAGTGA CCTTCAAGGA TGTGGCAGTG GTCTTCACTG 121 AGGAGGAGCT GGGGCTGCTG GACCTTGCCC AGAGGAAGCT GTATCGAGAT GTGATGCTGG 181 AGAACTTCAG GAACCTGCTG TCAGTGGGGC ATCAACCATT CCACCGAGAT ACTTTCCACT 241 TTCTAAGGGA GGAAAAGTTT TGGATGATGG ATATAGCAAC CCAAAGAGAA GGGAATTCAG 301 GAGGCAAGAT CCAACCTGAG ATGAAGACTT TTCCAGAAGC AGGACCACAT GAAGGGTGGT 361 CCTGCCAGCA GATCTGGGAA GAAATTGCAA GTGATTTAAC CAGGCCTCAA GACTCTACCA 421 TAAAGAGCTC TCAGTTCTTT GAACAGGGTG ATGCCCACTC CCAGGTTGAG GAAGGAATAT 481 CTATAATGCA CACAGGACAG AAACCTTCCA ATTGTGGGAA GTGTAAACAA TCCTTCAGTG 541 ATATGTCCAT CTTTGATCTT CCTCAGCAAA TACGCTCAGC AGAGAAGTCT CATTCCTGTG 601 ATGAGTGTGG AAAAAGCTTC TGTTACATCT CAGCACTTCA TATTCATCAG AGAGTCCACC 661 TGGGAGAGAA ACTCTTTAAG TGTGACGTGT GTGGTAAGGA ATTCAGTCAG AGTTTACATC 721 TGCAAACTCA TCAGAGAGTC CATACTGGAG AGAAACCTTT CAAATGTGAA CAATGTGGGA 781 GAGGCTTCAG ATGTAGATCA GCACTTACAG TTCATTGCAA ATTACACATG GGAGAGAAAC 841 ATTATAATTG TGAGGCATGT GGGAGGGCCT TCATTCATGA TTTCCAGCTT CAGAAACATC 901 AGAGAATTCA CACAGGGGAG AAGCCATTCA AATGTGAGAT ATGTAGTGTG AGCTTCCGTC 961 TTAGGTCAAG TCTTAATAGG CATTGTGTGG TCCACACAGG AAAGAAACCA AACAGCACTG 1021 GGGAATATGG AAAAGGCTTC ATTCGTAGGC TGGATTTGTG TAAGCATCAG ACGATCCACA 1081 CAGGAGAGAA ACCATATAAT TGTAAAGAAT GTGGGAAGAG CTTCAGACGG TCCTCCTATC 1141 TTTTGATCCA TCAGCGAGTC CACACTGGAG AAAAGCCATA CAAATGTGAC AAGTGTGGGA 1201 AGAGCTACAT TACTAAGTCA GGTCTTGACT TGCACCACAG AGCCCACACA GGAGAGAGAC 1261 CTTATAACTG TGATGACTGT GGGAAGAGCT TTAGACAGGC CTCAAGTATT TTGAATCATA 1321 AGAGACTCCA TTGCCGAAAA AAACCATTCA AATGTGAGGA TTGTGGAAAG AAGCTTGTAT 1381 ACCGGTCATA CCGTAAAGAC CAACAAAAAA ACCACAGTGG AGAAAATCCA TCCAAATGTG 1441 AAGACTGTGG GAAGCGCTAC AAGAGGCGCT TGAATCTTGA TATAATTTTA TCATTATTTT 1501 TAAATGACAC GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 1561 caatttgttg caacgaac