Construct: ORF ccsbBroadEn_11497

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004641.1_s300c1, BRDN0000396836
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TUBGCP3 (10426)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10426 TUBGCP3 tubulin gamma complex assoc... NM_001286278.2 100% 100%
2 human 10426 TUBGCP3 tubulin gamma complex assoc... XM_005268293.2 99.1% 99% (many diffs)
3 human 10426 TUBGCP3 tubulin gamma complex assoc... NM_006322.6 90.6% 89.9% (many diffs)
4 human 10426 TUBGCP3 tubulin gamma complex assoc... NM_001286277.2 89.5% 88.8% (many diffs)
5 human 10426 TUBGCP3 tubulin gamma complex assoc... XM_011537462.2 79.6% 78.9% (many diffs)
6 human 10426 TUBGCP3 tubulin gamma complex assoc... XM_017020323.2 65.4% 64.7% (many diffs)
7 human 10426 TUBGCP3 tubulin gamma complex assoc... XR_001749455.2 60.1% (many diffs)
8 human 10426 TUBGCP3 tubulin gamma complex assoc... NM_001286279.1 50.9% 48.9% (many diffs)
9 mouse 259279 Tubgcp3 tubulin, gamma complex asso... NM_198031.1 77.2% 84.2% (many diffs)
10 mouse 259279 Tubgcp3 tubulin, gamma complex asso... XM_006508798.1 75.2% 81.9% (many diffs)
11 mouse 259279 Tubgcp3 tubulin, gamma complex asso... XM_011242063.1 63.4% 65.6% (many diffs)
12 mouse 259279 Tubgcp3 tubulin, gamma complex asso... XM_006508800.1 61.4% 65.2% (many diffs)
13 mouse 259279 Tubgcp3 tubulin, gamma complex asso... XM_011242062.1 51% 56.5% (many diffs)
14 mouse 259279 Tubgcp3 tubulin, gamma complex asso... XM_006508801.2 39.1% 43.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2538
ORF length:
2472
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC GACCCCGGAC CAGAAGTCGC CGAACGTTCT GCTGCAGAAC CTGTGCTGCA
121GGATCCTGGG CAGGAGCGAA GCTGATGTAG CCCAGCAGTT CCAGTATGCT GTGCGGGTGA
181TTGGCAGCAA CTTCGCCCCA ACTGTTGAAA GAGATGAATT TTTAGTAGCT GAAAAAATCA
241AGAAAGAGCT TATTCGACAA CGAAGAGAAG CAGATGCTGC ATTATTTTCA GAACTCCACA
301GAAAACTTCA TTCACAGGGA GTTTTGAAAA ATAAATGGTC AATACTCTAC CTCTTGCTGA
361GCCTCAGTGA GGACCCACGC AGGCAGCCAA GCAAGGTTTC TAGCTATGCT ACGTTATTTG
421CTCAGGCCTT ACCAAGAGAT GCCCACTCAA CCCCTTACTA CTATGCCAGG CCTCAGACCC
481TTCCCCTGAG CTACCAAGAT CGGAGTGCCC AGTCAGCCCA GAGCTCCGGC AGCGTGGGCA
541GCAGTGGCAT CAGCAGCATT GGCCTGTGTG CCCTCAGTGG CCCCGCGCCT GCGCCACAAT
601CTCTCCTCCC AGGACAGTCT AATCAAGCTC CAGGAGTAGG AGATTGCCTT CGACAGCAGT
661TGGGGTCACG ACTCGCATGG ACTTTAACTG CAAATCAGCC TTCTTCACAA GCCACTACCT
721CAAAAGGTGT CCCCAGTGCT GTGTCTCGCA ACATGACAAG GTCCAGGAGA GAAGGGGATA
781CGGGTGGTAC TATGGAAATT ACAGAAGCAG CTCTGGTAAG GGACATTTTG TACGTCTTTC
841AGGGCATAGA TGGCAAAAAC ATCAAAATGA ACAACACTGA AAATTGTTAC AAAGTAGAAG
901GAAAGGCAAA TCTAAGTAGG TCTTTGAGAG ACACAGCAGT CAGGCTTTCT GAGTTGGGAT
961GGTTGCATAA TAAAATCAGA AGATACACGG ACCAGAGGAG CCTGGACCGC TCATTCGGAC
1021TCGTCGGGCA GAGCTTTTGT GCTGCCTTGC ACCAGGAACT CAGAGAATAC TATCGATTGC
1081TCTCTGTTTT ACATTCTCAG CTACAACTAG AGGATGACCA GGGTGTGAAT TTGGGACTTG
1141AGAGTAGTTT AACACTTCGG CGCCTCCTGG TTTGGACCTA TGATCCCAAA ATACGACTGA
1201AGACCCTTGC GGCCCTAGTG GACCACTGCC AAGGAAGGAA AGGAGGTGAG CTGGCCTCAG
1261CTGTCCACGC CTACACAAAA ACAGGAGACC CGTACATGCG GTCTCTGGTG CAGCACATCC
1321TCAGCCTCGT GTCTCATCCT GTTTTGAGCT TCCTGTACCG CTGGATATAT GATGGGGAGC
1381TTGAGGACAC TTACCACGAA TTTTTTGTAG CATCAGATCC AACAGTTAAA ACAGATCGAC
1441TGTGGCACGA CAAGTATACT TTGAGGAAAT CGATGATTCC TTCGTTTATG ACGATGGATC
1501AGTCTAGGAA GGTCCTTTTG ATAGGAAAAT CAATAAATTT CTTGCACCAA GTTTGTCATG
1561ATCAGACTCC CACTACAAAG ATGATAGCTG TGACCAAGTC TGCAGAGTCA CCCCAGGACG
1621CTGCAGACCT ATTCACAGAC TTGGAAAATG CATTTCAGGG GAAGATTGAT GCTGCTTATT
1681TTGAGACCAG CAAATACCTG TTGGATGTTC TCAATAAAAA GTACAGCTTG CTGGACCACA
1741TGCAGGCAAT GAGGCGGTAC CTGCTTCTTG GTCAAGGAGA CTTTATAAGG CACTTAATGG
1801ACTTGCTAAA ACCAGAACTT GTCCGTCCAG CTACGACTTT GTATCAGCAT AACTTGACTG
1861GAATTCTAGA AACCGCTGTC AGAGCCACCA ACGCACAGTT TGACAGTCCT GAGATCCTGC
1921GAAGGCTGGA CGTGCGGCTG CTGGAGGTCT CTCCAGGTGA CACTGGATGG GATGTCTTCA
1981GCCTCGATTA TCATGTTGAC GGACCAATTG CAACTGTGTT TACTCGAGAA TGTATGAGCC
2041ACTACCTAAG AGTATTTAAC TTCCTCTGGA GGGCGAAGCG GATGGAATAC ATCCTCACTG
2101ACATACGGAA GGGACACATG TGCAATGCAA AGCTCCTGAG AAACATGCCA GAGTTCTCCG
2161GGGTGCTGCA CCAGTGTCAC ATTTTGGCCT CTGAGATGGT CCATTTCATT CATCAGATGC
2221AGTATTACAT CACATTTGAG GTGCTTGAAT GTTCTTGGGA TGAGCTTTGG AACAAAGTCC
2281AGCAGGCCCA GGATTTGGAT CACATCATTG CTGCACACGA GGTGTTCTTA GACACCATCA
2341TCTCCCGCTG CCTGCTGGAC AGTGACTCCA GGGCACTTTT AAATCAACTT AGAGCTGTGT
2401TTGATCAAAT TATTGAACTT CAGAATGCTC AAGATGCAAT ATACAGAGCT GCTCTGGAAG
2461AATTGCAGAG ACGATTACAG TTTGAAGAGA AAAAGAAACA GCGTGAAATT GAGGTTGAGA
2521TGTGCCTATA CTGCGTTTGC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
2581gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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