Construct: ORF ccsbBroadEn_12695

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017757.1_s300c1, BRDN0000394880
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ADAM33 (80332)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80332 ADAM33 ADAM metallopeptidase domai... NM_001282447.2 85.2% 85.2% 803_1162del
2 human 80332 ADAM33 ADAM metallopeptidase domai... NM_025220.4 85.1% 85.1% 803_1162del;2403_2405delAGC
3 human 80332 ADAM33 ADAM metallopeptidase domai... XM_011529367.1 84.9% 84.8% 254_255insCAG;800_1159del;2400_2402delAGC
4 human 80332 ADAM33 ADAM metallopeptidase domai... XM_006723640.1 84% 84% 333_371del;842_1192del;2433_2435delAGC
5 human 80332 ADAM33 ADAM metallopeptidase domai... XM_005260843.1 83.7% 83.7% 333_371del;842_1201del;2442_2444delAGC
6 human 80332 ADAM33 ADAM metallopeptidase domai... XM_011529366.1 83.6% 83.5% (many diffs)
7 human 80332 ADAM33 ADAM metallopeptidase domai... NM_153202.3 81.9% 81.9% 803_1162del;1904_1905ins78;2325_2327delAGC
8 human 80332 ADAM33 ADAM metallopeptidase domai... XR_937152.1 76.7% (many diffs)
9 human 80332 ADAM33 ADAM metallopeptidase domai... XR_937151.1 76.5% (many diffs)
10 human 80332 ADAM33 ADAM metallopeptidase domai... XM_011529373.2 68.7% 60.2% (many diffs)
11 human 80332 ADAM33 ADAM metallopeptidase domai... XM_011529370.1 60.8% 50.2% (many diffs)
12 human 80332 ADAM33 ADAM metallopeptidase domai... XR_001754405.1 57.2% (many diffs)
13 human 80332 ADAM33 ADAM metallopeptidase domai... XR_002958534.1 56.8% (many diffs)
14 human 80332 ADAM33 ADAM metallopeptidase domai... XM_017028082.1 51.8% 39.1% (many diffs)
15 human 80332 ADAM33 ADAM metallopeptidase domai... XM_017028083.1 50% 39.4% (many diffs)
16 human 80332 ADAM33 ADAM metallopeptidase domai... XM_017028081.2 46.7% 43% (many diffs)
17 human 80332 ADAM33 ADAM metallopeptidase domai... XM_011529371.2 46% 42.7% (many diffs)
18 human 80332 ADAM33 ADAM metallopeptidase domai... XM_017028080.2 46% 42.3% (many diffs)
19 human 80332 ADAM33 ADAM metallopeptidase domai... XM_006723644.2 42.7% 42.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2145
ORF length:
2076
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGGCTGGAGG CCCCGGAGAG CTCGGGGGAC CCCGTTGCTG CTGCTGCTAC
121TACTGCTGCT GCTCTGGCCA GTGCCAGGCG CCGGGGTGCT TCAAGGACAT ATCCCTGGGC
181AGCCAGTCAC CCCGCACTGG GTCCTGGATG GACAACCCTG GCGCACCGTC AGCCTGGAGG
241AGCCGGTCTC GAAGCCAGAC ATGGGGCTGG TGGCCCTGGA GGCTGAAGGC CAGGAGCTCC
301TGCTTGAGCT GGAGAAGAAC CACAGGCTGC TGGCCCCAGG ATACATAGAA ACCCACTACG
361GCCCAGATGG GCAGCCAGTG GTGCTGGCCC CCAACCACAC GGATCATTGC CACTACCAAG
421GGCGAGTAAG GGGCTTCCCC GACTCCTGGG TAGTCCTCTG CACCTGCTCT GGGATGAGTG
481GCCTGATCAC CCTCAGCAGG AATGCCAGCT ATTATCTGCG TCCCTGGCCA CCCCGGGGCT
541CCAAGGACTT CTCAACCCAC GAGATCTTTC GGATGGAGCA GCTGCTCACC TGGAAAGGAA
601CCTGTGGCCA CAGGGATCCT GGGAACAAAG CGGGCATGAC CAGCCTTCCT GGTGGTCCCC
661AGAGCAGGGG CAGGCGAGAA GCGCGCAGGA CCCGGAAGTA CCTGGAACTG TACATTGTGG
721CAGACCACAC CCTGTTCTTG ACTCGGCACC GAAACTTGAA CCACACCAAA CAGCGTCTCC
781TGGAAGTCGC CAACTACGTG GACCAGCTTC TCAGGACTCT GGACATTCAG GTGGCGCTGA
841CCGGCCTGGA GGTGTGGACC GAGCGGGACC GCAGCCGCCG CCAGCTGCGC GCCTTCTTCC
901GCAAGGGGGG CGGCGCTTGC CTCTCCAATG CCCCGGACCC CGGACTCCCG GTGCCGCCGG
961CGCTCTGCGG GAACGGCTTC GTGGAAGCGG GCGAGGAGTG TGACTGCGGC CCTGGCCAGG
1021AGTGCCGCGA CCTCTGCTGC TTTGCTCACA ACTGCTCGCT GCGCCCGGGG GCCCAGTGCG
1081CCCACGGGGA CTGCTGCGTG CGCTGCCTGC TGAAGCCGGC TGGAGCGCTG TGCCGCCAGG
1141CCATGGGTGA CTGTGACCTC CCTGAGTTTT GCACGGGCAC CTCCTCCCAC TGTCCCCCAG
1201ACGTTTACCT ACTGGACGGC TCACCCTGTG CCAGGGGCAG TGGCTACTGC TGGGATGGCG
1261CATGTCCCAC GCTGGAGCAG CAGTGCCAGC AGCTCTGGGG GCCTGGCTCC CACCCAGCTC
1321CCGAGGCCTG TTTCCAGGTG GTGAACTCTG CGGGAGATGC TCATGGAAAC TGCGGCCAGG
1381ACAGCGAGGG CCACTTCCTG CCCTGTGCAG GGAGGGATGC CCTGTGTGGG AAGCTGCAGT
1441GCCAGGGTGG AAAGCCCAGC CTGCTCGCAC CGCACATGGT GCCAGTGGAC TCTACCGTTC
1501ACCTAGATGG CCAGGAAGTG ACTTGTCGGG GAGCCTTGGC ACTCCCCAGT GCCCAGCTGG
1561ACCTGCTTGG CCTGGGCCTG GTAGAGCCAG GCACCCAGTG TGGACCTAGA ATGGTGTGCC
1621AGAGCAGGCG CTGCAGGAAG AATGCCTTCC AGGAGCTTCA GCGCTGCCTG ACTGCCTGCC
1681ACAGCCACGG GGTTTGCAAT AGCAACCATA ACTGCCACTG TGCTCCAGGC TGGGCTCCAC
1741CCTTCTGTGA CAAGCCAGGC TTTGGTGGCA GCATGGACAG TGGCCCTGTG CAGGCTGAAA
1801ACCATGACAC CTTCCTGCTG GCCATGCTCC TCAGCGTCCT GCTGCCTCTG CTCCCAGGGG
1861CCGGCCTGGC CTGGTGTTGC TACCGACTCC CAGGAGCCCA TCTGCAGCGA TGCAGCTGGG
1921GCTGCAGAAG GGACCCTGCG TGCAGTGGCC CCAAAGATGG CCCACACAGG GACCACCCCC
1981TGGGCGGCGT TCACCCCATG GAGTTGGGCC CCACAGCCAC TGGACAGCCC TGGCCCCTGG
2041ACCCTGAGAA CTCTCATGAG CCCAGCAGCC ACCCTGAGAA GCCTCTGCCA GCAGTCTCGC
2101CTGACCCCCA AGATCAAGTC CAGATGCCAA GATCCTGCCT CTGGTTGCCA ACTTTCTTGT
2161ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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