Construct: ORF ccsbBroadEn_12695
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017757.1_s300c1, BRDN0000394880
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ADAM33 (80332)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | NM_001282447.2 | 85.2% | 85.2% | 803_1162del |
| 2 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | NM_025220.4 | 85.1% | 85.1% | 803_1162del;2403_2405delAGC |
| 3 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_011529367.1 | 84.9% | 84.8% | 254_255insCAG;800_1159del;2400_2402delAGC |
| 4 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_006723640.1 | 84% | 84% | 333_371del;842_1192del;2433_2435delAGC |
| 5 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_005260843.1 | 83.7% | 83.7% | 333_371del;842_1201del;2442_2444delAGC |
| 6 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_011529366.1 | 83.6% | 83.5% | (many diffs) |
| 7 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | NM_153202.3 | 81.9% | 81.9% | 803_1162del;1904_1905ins78;2325_2327delAGC |
| 8 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XR_937152.1 | 76.7% | (many diffs) | |
| 9 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XR_937151.1 | 76.5% | (many diffs) | |
| 10 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_011529373.2 | 68.7% | 60.2% | (many diffs) |
| 11 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_011529370.1 | 60.8% | 50.2% | (many diffs) |
| 12 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XR_001754405.1 | 57.2% | (many diffs) | |
| 13 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XR_002958534.1 | 56.8% | (many diffs) | |
| 14 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_017028082.1 | 51.8% | 39.1% | (many diffs) |
| 15 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_017028083.1 | 50% | 39.4% | (many diffs) |
| 16 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_017028081.2 | 46.7% | 43% | (many diffs) |
| 17 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_011529371.2 | 46% | 42.7% | (many diffs) |
| 18 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_017028080.2 | 46% | 42.3% | (many diffs) |
| 19 | human | 80332 | ADAM33 | ADAM metallopeptidase domai... | XM_006723644.2 | 42.7% | 42.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2145
- ORF length:
- 2076
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGGCTGGAGG CCCCGGAGAG CTCGGGGGAC CCCGTTGCTG CTGCTGCTAC 121 TACTGCTGCT GCTCTGGCCA GTGCCAGGCG CCGGGGTGCT TCAAGGACAT ATCCCTGGGC 181 AGCCAGTCAC CCCGCACTGG GTCCTGGATG GACAACCCTG GCGCACCGTC AGCCTGGAGG 241 AGCCGGTCTC GAAGCCAGAC ATGGGGCTGG TGGCCCTGGA GGCTGAAGGC CAGGAGCTCC 301 TGCTTGAGCT GGAGAAGAAC CACAGGCTGC TGGCCCCAGG ATACATAGAA ACCCACTACG 361 GCCCAGATGG GCAGCCAGTG GTGCTGGCCC CCAACCACAC GGATCATTGC CACTACCAAG 421 GGCGAGTAAG GGGCTTCCCC GACTCCTGGG TAGTCCTCTG CACCTGCTCT GGGATGAGTG 481 GCCTGATCAC CCTCAGCAGG AATGCCAGCT ATTATCTGCG TCCCTGGCCA CCCCGGGGCT 541 CCAAGGACTT CTCAACCCAC GAGATCTTTC GGATGGAGCA GCTGCTCACC TGGAAAGGAA 601 CCTGTGGCCA CAGGGATCCT GGGAACAAAG CGGGCATGAC CAGCCTTCCT GGTGGTCCCC 661 AGAGCAGGGG CAGGCGAGAA GCGCGCAGGA CCCGGAAGTA CCTGGAACTG TACATTGTGG 721 CAGACCACAC CCTGTTCTTG ACTCGGCACC GAAACTTGAA CCACACCAAA CAGCGTCTCC 781 TGGAAGTCGC CAACTACGTG GACCAGCTTC TCAGGACTCT GGACATTCAG GTGGCGCTGA 841 CCGGCCTGGA GGTGTGGACC GAGCGGGACC GCAGCCGCCG CCAGCTGCGC GCCTTCTTCC 901 GCAAGGGGGG CGGCGCTTGC CTCTCCAATG CCCCGGACCC CGGACTCCCG GTGCCGCCGG 961 CGCTCTGCGG GAACGGCTTC GTGGAAGCGG GCGAGGAGTG TGACTGCGGC CCTGGCCAGG 1021 AGTGCCGCGA CCTCTGCTGC TTTGCTCACA ACTGCTCGCT GCGCCCGGGG GCCCAGTGCG 1081 CCCACGGGGA CTGCTGCGTG CGCTGCCTGC TGAAGCCGGC TGGAGCGCTG TGCCGCCAGG 1141 CCATGGGTGA CTGTGACCTC CCTGAGTTTT GCACGGGCAC CTCCTCCCAC TGTCCCCCAG 1201 ACGTTTACCT ACTGGACGGC TCACCCTGTG CCAGGGGCAG TGGCTACTGC TGGGATGGCG 1261 CATGTCCCAC GCTGGAGCAG CAGTGCCAGC AGCTCTGGGG GCCTGGCTCC CACCCAGCTC 1321 CCGAGGCCTG TTTCCAGGTG GTGAACTCTG CGGGAGATGC TCATGGAAAC TGCGGCCAGG 1381 ACAGCGAGGG CCACTTCCTG CCCTGTGCAG GGAGGGATGC CCTGTGTGGG AAGCTGCAGT 1441 GCCAGGGTGG AAAGCCCAGC CTGCTCGCAC CGCACATGGT GCCAGTGGAC TCTACCGTTC 1501 ACCTAGATGG CCAGGAAGTG ACTTGTCGGG GAGCCTTGGC ACTCCCCAGT GCCCAGCTGG 1561 ACCTGCTTGG CCTGGGCCTG GTAGAGCCAG GCACCCAGTG TGGACCTAGA ATGGTGTGCC 1621 AGAGCAGGCG CTGCAGGAAG AATGCCTTCC AGGAGCTTCA GCGCTGCCTG ACTGCCTGCC 1681 ACAGCCACGG GGTTTGCAAT AGCAACCATA ACTGCCACTG TGCTCCAGGC TGGGCTCCAC 1741 CCTTCTGTGA CAAGCCAGGC TTTGGTGGCA GCATGGACAG TGGCCCTGTG CAGGCTGAAA 1801 ACCATGACAC CTTCCTGCTG GCCATGCTCC TCAGCGTCCT GCTGCCTCTG CTCCCAGGGG 1861 CCGGCCTGGC CTGGTGTTGC TACCGACTCC CAGGAGCCCA TCTGCAGCGA TGCAGCTGGG 1921 GCTGCAGAAG GGACCCTGCG TGCAGTGGCC CCAAAGATGG CCCACACAGG GACCACCCCC 1981 TGGGCGGCGT TCACCCCATG GAGTTGGGCC CCACAGCCAC TGGACAGCCC TGGCCCCTGG 2041 ACCCTGAGAA CTCTCATGAG CCCAGCAGCC ACCCTGAGAA GCCTCTGCCA GCAGTCTCGC 2101 CTGACCCCCA AGATCAAGTC CAGATGCCAA GATCCTGCCT CTGGTTGCCA ACTTTCTTGT 2161 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c