Construct: ORF ccsbBroadEn_13930

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002082.1_s300c1, BRDN0000390214
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PSG2 (5670)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5670 PSG2 pregnancy specific beta-1-g... NM_031246.4 99.6% 98.8% (many diffs)
2 human 5680 PSG11 pregnancy specific beta-1-g... NM_002785.3 94% 88.7% (many diffs)
3 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526986.1 91.3% 85.6% (many diffs)
4 human 5672 PSG4 pregnancy specific beta-1-g... NM_213633.3 90.4% 84.1% (many diffs)
5 human 5669 PSG1 pregnancy specific beta-1-g... XM_011527125.2 89.9% 84.1% (many diffs)
6 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301708.2 89.7% 77.5% (many diffs)
7 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027002.2 88.8% 83.5% (many diffs)
8 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527126.2 87.3% 80.1% (many diffs)
9 human 5673 PSG5 pregnancy specific beta-1-g... NM_001130014.2 87.3% 74.7% (many diffs)
10 human 5673 PSG5 pregnancy specific beta-1-g... NM_002781.4 87.3% 74.7% (many diffs)
11 human 5673 PSG5 pregnancy specific beta-1-g... XM_017027003.1 87.3% 74.7% (many diffs)
12 human 5669 PSG1 pregnancy specific beta-1-g... NM_001330524.2 85% 73.4% (many diffs)
13 human 5669 PSG1 pregnancy specific beta-1-g... XM_005259065.4 83.7% 72.9% (many diffs)
14 human 5672 PSG4 pregnancy specific beta-1-g... NM_001276495.1 83.3% 72.2% (many diffs)
15 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301707.2 82.7% 66.1% (many diffs)
16 human 5672 PSG4 pregnancy specific beta-1-g... XM_017027001.2 81.9% 71.7% (many diffs)
17 human 5678 PSG9 pregnancy specific beta-1-g... XM_005259075.4 75.9% 66.1% (many diffs)
18 human 5671 PSG3 pregnancy specific beta-1-g... NM_021016.4 72.8% 66.5% (many diffs)
19 human 5669 PSG1 pregnancy specific beta-1-g... NM_001297773.2 72% 65.2% (many diffs)
20 human 440533 PSG8 pregnancy specific beta-1-g... NM_182707.3 71.6% 66% (many diffs)
21 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184825.2 71.5% 66.1% (many diffs)
22 human 440533 PSG8 pregnancy specific beta-1-g... NM_001130167.2 71.5% 66.8% (many diffs)
23 human 5669 PSG1 pregnancy specific beta-1-g... NM_001184826.2 71.4% 65.6% (many diffs)
24 human 5676 PSG7 pregnancy specific beta-1-g... NM_002783.3 71.1% 67% (many diffs)
25 human 5672 PSG4 pregnancy specific beta-1-g... NM_002780.5 70.7% 65.6% (many diffs)
26 human 5669 PSG1 pregnancy specific beta-1-g... NM_006905.3 70.7% 65.8% (many diffs)
27 human 5675 PSG6 pregnancy specific beta-1-g... NM_001031850.4 70.4% 63.6% (many diffs)
28 human 5678 PSG9 pregnancy specific beta-1-g... NM_002784.5 70.3% 60.7% (many diffs)
29 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027005.2 70.2% 56.5% (many diffs)
30 human 5675 PSG6 pregnancy specific beta-1-g... NM_002782.5 69.8% 63.1% (many diffs)
31 human 5672 PSG4 pregnancy specific beta-1-g... XM_017026997.2 69.8% 65.3% (many diffs)
32 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027007.2 69.1% 60.6% (many diffs)
33 human 5671 PSG3 pregnancy specific beta-1-g... XM_011527127.2 65.9% 58.6% (many diffs)
34 human 5678 PSG9 pregnancy specific beta-1-g... NM_001301709.2 63.9% 54.2% (many diffs)
35 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027004.2 61.6% 53.6% (many diffs)
36 human 5680 PSG11 pregnancy specific beta-1-g... NM_001113410.2 58.6% 53.3% (many diffs)
37 human 5680 PSG11 pregnancy specific beta-1-g... NM_203287.2 58.6% 53.3% (many diffs)
38 human 5678 PSG9 pregnancy specific beta-1-g... XM_017027006.2 54.3% 46.4% (many diffs)
39 human 653492 PSG10P pregnancy specific beta-1-g... NR_026824.1 49.6% (many diffs)
40 human 440533 PSG8 pregnancy specific beta-1-g... XM_011526987.3 43.5% 37.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1071
ORF length:
1005
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGG GCCCCTCTCA GCCCCTCCCT GCACAGAGCA CATCAAATGG AAGGGGCTCC
121TGCTCACAGC ATCACTTTTA AACTTCTGGA ACCTGCCCAC CACTGCCCAA GTCACGATTG
181AAGCCCAGCC ACCAAAAGTT TCCGAGGGGA AGGATGTTCT TCTACTTGTC CACAATTTGC
241CCCAGAATCT TACTGGCTAC ATCTGGTACA AAGGGCAAAT CAGGGACCTC TACCATTACA
301TTACATCATA TGTAGTAGAC GGTCAAATAA TTATATATGG GCCTGCATAT AGTGGACGAG
361AAACAGCATA TTCCAATGCA TCCCTGCTGA TCCAGAATGT CACCCGGGAG GACGCAGGAT
421CCTACACCTT ACACATCATA AAGCGAGGTG ATGGGACTAG AGGAGTAACT GGATATTTCA
481CCTTCACCTT ATACCTGGAG ACTCCCAAGC CCTCCATCTC CAGCAGCAAC TTAAACCCCA
541GGGAGGCCAT GGAAACTGTG ATCTTAACCT GTGATCCTGA GACTCCGGAC ACAAGCTACC
601AGTGGTGGAT GAATGGTCAG AGCCTCCCTA TGACTCACAG GTTTCAGCTG TCCGAAACCA
661ACAGGACCCT CTTTCTATTT GGTGTCACAA AGTATACTGC AGGACCCTAT GAATGTGAAA
721TACGGAACTC AGGGAGTGCC AGCCGCAGTG ACCCAGTCAC CCTGAATCTC CTCCATGGTC
781CAGACCTCCC CAGAATTCAC CCTTCATACA CCAATTACCG TTCAGGAGAT AACCTCTACT
841TGTCTTGCTT CGCGAACTCT AACCCACCGG CACAGTATTC TTGGACAATT AATGGGAAGT
901TTCAGCAATC AGGACAAAAT CTGTTTATCC CCCAAATTAC TACAAAGCAT AGCGGGCTCT
961ATGTTTGCTC TGTTCGTAAC TCAGCCACTG GCGAGGAAAG CTCCACGTCG TTGACAGTCA
1021AAGTCTCTGC TTCTACAAGA ATAGGACTTC TTCCTCTCCT TATCCAACAT ACCCAACTTT
1081CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca acgaac

Download FASTA (ORF) (Full)