Transcript: Mouse NM_001100444.2

Mus musculus predicted gene 5934 (Gm5934), mRNA.

Source:
NCBI, updated 2015-02-15
Taxon:
Mus musculus (mouse)
Gene:
Gm5934 (546272)
Length:
991
CDS:
27..665

Additional Resources:

NCBI RefSeq record:
NM_001100444.2
NBCI Gene record:
Gm5934 (546272)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001100444.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000270437 GGAGACCAACAACTATGATAT pLKO_005 611 CDS 100% 13.200 7.920 N Gm5934 n/a
2 TRCN0000270392 GTAGTTGGAGATATACGAAAG pLKO_005 399 CDS 100% 6.000 3.600 N Gm5934 n/a
3 TRCN0000284275 TGAACAAGACACTATGTTGAA pLKO_005 194 CDS 100% 4.950 2.970 N Gm5934 n/a
4 TRCN0000177598 CCAAAGGATGGTTACTTATTA pLKO.1 54 CDS 100% 15.000 7.500 Y Gm4836 n/a
5 TRCN0000255531 ACCAAAGGATGGTTACTTATT pLKO_005 53 CDS 100% 13.200 6.600 Y Gm10486 n/a
6 TRCN0000255532 AGAAGTTTGATATGGATATAC pLKO_005 445 CDS 100% 13.200 6.600 Y Gm10486 n/a
7 TRCN0000270438 AGATGGTGAAGAGACATTATG pLKO_005 644 CDS 100% 13.200 6.600 Y Gm5934 n/a
8 TRCN0000256210 ATTTGGCAAACATGAGAATAT pLKO_005 137 CDS 100% 13.200 6.600 Y Gm2030 n/a
9 TRCN0000255758 CAAAGGATGGTTACTTATTAC pLKO_005 55 CDS 100% 13.200 6.600 Y Gm1993 n/a
10 TRCN0000255757 CAGAAGTTTGATATGGATATA pLKO_005 444 CDS 100% 13.200 6.600 Y Gm1993 n/a
11 TRCN0000197658 CAGAGTTTGAAAGGCTCTTTA pLKO.1 788 3UTR 100% 13.200 6.600 Y Xlr n/a
12 TRCN0000255323 CATTTGGCAAACATGAGAATA pLKO_005 136 CDS 100% 13.200 6.600 Y Gm6121 n/a
13 TRCN0000198925 GCAGGCTCATTCTGAAGTAAA pLKO.1 107 CDS 100% 13.200 6.600 Y Gm4836 n/a
14 TRCN0000255759 GTAGATGGTGAAGAGACATTA pLKO_005 642 CDS 100% 13.200 6.600 Y Gm1993 n/a
15 TRCN0000262244 GTGTGAGCAGAAGTTTGATAT pLKO_005 437 CDS 100% 13.200 6.600 Y Slx n/a
16 TRCN0000265743 TAGATGGTGAAGAGACATTAT pLKO_005 643 CDS 100% 13.200 6.600 Y Gm2030 n/a
17 TRCN0000262127 TTTGGCAAACATGAGAATATG pLKO_005 138 CDS 100% 13.200 6.600 Y Gm2012 n/a
18 TRCN0000262246 ACTTATTACTTCTTGACTTTG pLKO_005 67 CDS 100% 10.800 5.400 Y Slx n/a
19 TRCN0000282086 AGAAGAAGAGCAGGCTCATTC pLKO_005 98 CDS 100% 10.800 5.400 Y Gm10488 n/a
20 TRCN0000282085 ATGATGATGGGAATGCAAATC pLKO_005 370 CDS 100% 10.800 5.400 Y Gm10488 n/a
21 TRCN0000262245 CAGGCTCATTCTGAAGTAAAG pLKO_005 108 CDS 100% 10.800 5.400 Y Slx n/a
22 TRCN0000255325 CATGATGATGGGAATGCAAAT pLKO_005 369 CDS 100% 10.800 5.400 Y Gm6121 n/a
23 TRCN0000270442 GAAGTAAAGAGGCCAGCATTT pLKO_005 120 CDS 100% 10.800 5.400 Y Gm5935 n/a
24 TRCN0000177273 GCAGAAGTTTGATATGGATAT pLKO.1 443 CDS 100% 10.800 5.400 Y Gm4836 n/a
25 TRCN0000255534 GCTTCAGAATTGGACCTTATG pLKO_005 327 CDS 100% 10.800 5.400 Y Gm10486 n/a
26 TRCN0000282088 GGAAGTACAGAATCCAGTAAC pLKO_005 347 CDS 100% 10.800 5.400 Y Gm10488 n/a
27 TRCN0000253104 TGCTTCAGAATTGGACCTTAT pLKO_005 326 CDS 100% 10.800 5.400 Y Gm5169 n/a
28 TRCN0000255324 TGGATATACAGAAATTCAATG pLKO_005 457 CDS 100% 10.800 5.400 Y Gm6121 n/a
29 TRCN0000270444 TGTGAGCAGAAGTTTGATATG pLKO_005 438 CDS 100% 10.800 5.400 Y Gm5935 n/a
30 TRCN0000270393 TTCTCACTTGCTGGTACATTG pLKO_005 724 3UTR 100% 10.800 5.400 Y Gm5934 n/a
31 TRCN0000255756 TTTCCCATCTTCAGACTAATG pLKO_005 691 3UTR 100% 10.800 5.400 Y Gm1993 n/a
32 TRCN0000272285 CGTTCTGTAGAGACACCAATG pLKO_005 264 CDS 100% 6.000 3.000 Y Gm14632 n/a
33 TRCN0000176530 CCTATGAAACAGAGTTTGAAA pLKO.1 779 3UTR 100% 5.625 2.813 Y Xlr n/a
34 TRCN0000284688 GAAGTCCATGGAGGGTTTGAT pLKO_005 584 CDS 100% 5.625 2.813 Y Gm10147 n/a
35 TRCN0000270059 GAAGTTTGATATGGATATACA pLKO_005 446 CDS 100% 5.625 2.813 Y Gm5168 n/a
36 TRCN0000272284 TAAGTGGTGAACAGCAAGTTA pLKO_005 301 CDS 100% 5.625 2.813 Y Gm14632 n/a
37 TRCN0000284666 ACAGAATCCAGTAACTCATGA pLKO_005 353 CDS 100% 4.950 2.475 Y Gm10058 n/a
38 TRCN0000272223 ACGTTCTGTAGAGACACCAAT pLKO_005 263 CDS 100% 4.950 2.475 Y Gm10058 n/a
39 TRCN0000285691 ATATGCCGCCTCACGTAGAAG pLKO_005 154 CDS 100% 4.950 2.475 Y Gm14819 n/a
40 TRCN0000297031 ATGCTTCAGAATTGGACCTTA pLKO_005 325 CDS 100% 4.950 2.475 Y Gm10487 n/a
41 TRCN0000178574 CAAGTTAGGAATGCTTCAGAA pLKO.1 315 CDS 100% 4.950 2.475 Y Gm4836 n/a
42 TRCN0000272192 CAGAATCCAGTAACTCATGAT pLKO_005 354 CDS 100% 4.950 2.475 Y Gm10230 n/a
43 TRCN0000200034 CCTCACGTAGAAGCAGATGAA pLKO.1 162 CDS 100% 4.950 2.475 Y Gm4836 n/a
44 TRCN0000272263 CTTCAGAATTGGACCTTATGG pLKO_005 328 CDS 100% 4.950 2.475 Y Gm10096 n/a
45 TRCN0000180944 GAACATGGAGACCAACAACTA pLKO.1 605 CDS 100% 4.950 2.475 Y Gm5168 n/a
46 TRCN0000363943 GAAGAAGAGCAGGCTCATTCT pLKO_005 99 CDS 100% 4.950 2.475 Y Gm10230 n/a
47 TRCN0000272136 GAAGTACAGAATCCAGTAACT pLKO_005 348 CDS 100% 4.950 2.475 Y Gm10487 n/a
48 TRCN0000178261 GACCTTATGGAAGTACAGAAT pLKO.1 339 CDS 100% 4.950 2.475 Y Gm4836 n/a
49 TRCN0000284692 GTACAGAATCCAGTAACTCAT pLKO_005 351 CDS 100% 4.950 2.475 Y Gm10096 n/a
50 TRCN0000177231 GTCTCCTATGAAACAGAGTTT pLKO.1 775 3UTR 100% 4.950 2.475 Y Xlr n/a
51 TRCN0000284689 TGGTTACTTATTACTTCTTGA pLKO_005 62 CDS 100% 4.950 2.475 Y Gm10147 n/a
52 TRCN0000272155 ACTGTCCGAATGTAGTCAGAG pLKO_005 530 CDS 100% 4.050 2.025 Y Gm10230 n/a
53 TRCN0000272261 AGTGGTGAACAGCAAGTTAGG pLKO_005 303 CDS 100% 4.050 2.025 Y Gm10147 n/a
54 TRCN0000178184 CAACAAATTGTGTGAGCAGAA pLKO.1 428 CDS 100% 4.050 2.025 Y Gm4836 n/a
55 TRCN0000182354 GAAGAAGAAGAGCAGGCTCAT pLKO.1 96 CDS 100% 4.050 2.025 Y Gm4836 n/a
56 TRCN0000272235 GAATATGCCGCCTCACGTAGA pLKO_005 152 CDS 100% 4.050 2.025 Y Gm10147 n/a
57 TRCN0000253103 TACCAAAGGATGGTTACTTAT pLKO_005 52 CDS 100% 0.000 0.000 Y Gm5169 n/a
58 TRCN0000256213 TTCTCACTTGCTGGTACATTT pLKO_005 724 3UTR 100% 13.200 6.600 Y Gm2030 n/a
59 TRCN0000272118 TGAAGAAGTAGTTGGAGATAC pLKO_005 392 CDS 100% 10.800 5.400 Y Gm14819 n/a
60 TRCN0000284710 CTCACGTAGAAGCAGATGAAG pLKO_005 163 CDS 100% 4.950 2.475 Y Gm14632 n/a
61 TRCN0000256699 TCTCACTTGCTGGTACATTTG pLKO_005 725 3UTR 100% 10.800 5.400 Y Gm4297 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001100444.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.