Transcript: Human NM_001145280.3

Homo sapiens opioid receptor mu 1 (OPRM1), transcript variant MOR-1G1, mRNA.

Source:
NCBI, updated 2019-07-23
Taxon:
Homo sapiens (human)
Gene:
OPRM1 (4988)
Length:
15069
CDS:
534..1436

Additional Resources:

NCBI RefSeq record:
NM_001145280.3
NBCI Gene record:
OPRM1 (4988)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001145280.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000009274 CCGTAGTAACACATAAAGTAA pLKO.1 1811 3UTR 100% 5.625 7.875 N OPRM1 n/a
2 TRCN0000357703 TTATGCCAGTGCTCATCATTA pLKO_005 964 CDS 100% 13.200 10.560 N OPRM1 n/a
3 TRCN0000011783 CGGCCAATACAGTGGATAGAA pLKO.1 1366 CDS 100% 5.625 4.500 N OPRM1 n/a
4 TRCN0000368502 TGATCTCCATAGATTACTATA pLKO_005 667 CDS 100% 13.200 9.240 N OPRM1 n/a
5 TRCN0000357704 TGTGAATTGAAGTCATCATAA pLKO_005 1705 3UTR 100% 13.200 9.240 N OPRM1 n/a
6 TRCN0000011784 CCAGAGTGTGAATTACCTAAT pLKO.1 608 CDS 100% 10.800 7.560 N OPRM1 n/a
7 TRCN0000009275 CGTGTGCTATGGACTGATGAT pLKO.1 986 CDS 100% 4.950 3.465 N OPRM1 n/a
8 TRCN0000011785 GCATTGCTCTAGGTTACACAA pLKO.1 1201 CDS 100% 4.950 3.465 N OPRM1 n/a
9 TRCN0000166364 CACACACACACACACACACAA pLKO.1 12582 3UTR 100% 4.950 2.475 Y KAAG1 n/a
10 TRCN0000073413 CGCCTGTAATTCCAGCACTTT pLKO.1 9564 3UTR 100% 4.950 2.475 Y LILRB1 n/a
11 TRCN0000008902 CCTCCCAAAGTGTTGGGATTA pLKO.1 13137 3UTR 100% 1.080 0.540 Y GPR83 n/a
12 TRCN0000156315 CCTCCCAAAGTGTTGGGATTA pLKO.1 13137 3UTR 100% 1.080 0.540 Y MYORG n/a
13 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 8774 3UTR 100% 5.625 2.813 Y KLHL30 n/a
14 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 8642 3UTR 100% 2.640 1.320 Y LINC01098 n/a
15 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 9727 3UTR 100% 10.800 5.400 Y SMIM11A n/a
16 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 8774 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001145280.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01122 pDONR223 100% 75% 75% None 0_1ins300 n/a
2 ccsbBroad304_01122 pLX_304 0% 75% 75% V5 0_1ins300 n/a
3 TRCN0000492306 TTGATCTCAAGGTTACTTTAACGC pLX_317 30.6% 64.9% 64.9% V5 (not translated due to prior stop codon) 0_1ins486 n/a
4 TRCN0000488117 GCCCGGGTCACCAAGCGACCACCG pLX_317 15.7% 64.8% 64.7% V5 0_1ins486;900_901insG n/a
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