Transcript: Human NM_001354997.3

Homo sapiens solute carrier family 35 member E3 (SLC35E3), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-29
Taxon:
Homo sapiens (human)
Gene:
SLC35E3 (55508)
Length:
17611
CDS:
203..1033

Additional Resources:

NCBI RefSeq record:
NM_001354997.3
NBCI Gene record:
SLC35E3 (55508)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001354997.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000433625 TGGAATGATTTGTCGGAATTA pLKO_005 1431 3UTR 100% 13.200 10.560 N SLC35E3 n/a
2 TRCN0000412614 ATGTTGTCCCAAGAAGATAAA pLKO_005 1056 3UTR 100% 13.200 9.240 N SLC35E3 n/a
3 TRCN0000043711 GCCAAACAGCATGAATTACAA pLKO.1 614 CDS 100% 5.625 3.938 N SLC35E3 n/a
4 TRCN0000043712 ACCCACTTTAAGCTCAGTGAA pLKO.1 974 CDS 100% 4.950 3.465 N SLC35E3 n/a
5 TRCN0000043710 CGGACACTTCAAGTTCTGCAT pLKO.1 859 CDS 100% 2.640 1.848 N SLC35E3 n/a
6 TRCN0000043709 GCTTTGCTTATGGTGCTGCTA pLKO.1 758 CDS 100% 2.640 1.848 N SLC35E3 n/a
7 TRCN0000007228 CACCTGTAATCCCAGCACTTT pLKO.1 2367 3UTR 100% 4.950 2.475 Y CFLAR n/a
8 TRCN0000166635 CACCTGTAATCCCAGCACTTT pLKO.1 2367 3UTR 100% 4.950 2.475 Y C19orf31 n/a
9 TRCN0000084008 CGCCTATAATCCCAGCACTTT pLKO.1 4169 3UTR 100% 4.950 2.475 Y NPHS1 n/a
10 TRCN0000074123 CGCCTGTAATCCCAACACTTT pLKO.1 5537 3UTR 100% 4.950 2.475 Y GJD4 n/a
11 TRCN0000166650 CGCCTGTAATCCCAACACTTT pLKO.1 5537 3UTR 100% 4.950 2.475 Y C9orf85 n/a
12 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 1137 3UTR 100% 4.950 2.475 Y ERAP2 n/a
13 TRCN0000140719 GATCACTTGAGGTCAGGAGTT pLKO.1 1176 3UTR 100% 4.050 2.025 Y P3H4 n/a
14 TRCN0000165299 GATCACTTGAGGTCAGGAGTT pLKO.1 1176 3UTR 100% 4.050 2.025 Y ORAI2 n/a
15 TRCN0000352971 GATCACTTGAGGTCAGGAGTT pLKO_005 1176 3UTR 100% 4.050 2.025 Y P3H4 n/a
16 TRCN0000157476 GCCAACATGGTGAAACCCAAT pLKO.1 12462 3UTR 100% 4.050 2.025 Y NFASC n/a
17 TRCN0000136653 GCCTGACCAACATGGTGAAAT pLKO.1 7222 3UTR 100% 13.200 6.600 Y IQCC n/a
18 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1138 3UTR 100% 13.200 6.600 Y LIAS n/a
19 TRCN0000256748 GGCAGGAGAATTGCTTGAATC pLKO_005 14836 3UTR 100% 10.800 5.400 Y SMIM11A n/a
20 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 8438 3UTR 100% 5.625 2.813 Y KLHL30 n/a
21 TRCN0000021429 CACACCTGTAATCCCAGCATT pLKO.1 2365 3UTR 100% 4.950 2.475 Y ERN2 n/a
22 TRCN0000138998 CACACCTGTAATCCCAGCATT pLKO.1 2365 3UTR 100% 4.950 2.475 Y P3H4 n/a
23 TRCN0000344020 CACACCTGTAATCCCAGCATT pLKO_005 2365 3UTR 100% 4.950 2.475 Y P3H4 n/a
24 TRCN0000264189 CAAGTAGCTGGGACTACAGGA pLKO_005 16436 3UTR 100% 2.640 1.320 Y LINC01098 n/a
25 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 8438 3UTR 100% 5.625 2.813 Y EID2B n/a
26 TRCN0000161892 GCCTGTAATTCCAGCTACTTA pLKO.1 4305 3UTR 100% 5.625 2.813 Y GPN2 n/a
27 TRCN0000138772 GCAGGAGAATCGCTTGAACTT pLKO.1 2533 3UTR 100% 4.950 2.475 Y DCAF11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001354997.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_03598 pDONR223 100% 88.1% 88.1% None 400_401ins111 n/a
2 ccsbBroad304_03598 pLX_304 0% 88.1% 88.1% V5 400_401ins111 n/a
3 TRCN0000473034 CTCTTACCGCGGATAGGTAGGCTT pLX_317 54.5% 88.1% 88.1% V5 400_401ins111 n/a
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