Transcript: Mouse NM_007888.3

Mus musculus dishevelled segment polarity protein 2 (Dvl2), mRNA.

Source:
NCBI, updated 2017-05-14
Taxon:
Mus musculus (mouse)
Gene:
Dvl2 (13543)
Length:
2937
CDS:
210..2420

Additional Resources:

NCBI RefSeq record:
NM_007888.3
NBCI Gene record:
Dvl2 (13543)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_007888.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000097190 CGAGCTTTCTTCGTACACCTA pLKO.1 1916 CDS 100% 2.640 3.696 N Dvl2 n/a
2 TRCN0000329564 CTGTGAGAGTTACCTAGTTAA pLKO_005 1742 CDS 100% 13.200 10.560 N Dvl2 n/a
3 TRCN0000329563 TAGGCGAGACGAAGGTGATTT pLKO_005 241 CDS 100% 13.200 10.560 N Dvl2 n/a
4 TRCN0000097189 GCTGCCTTTGTTACTCTATTT pLKO.1 2872 3UTR 100% 13.200 9.240 N Dvl2 n/a
5 TRCN0000303995 GCTGCCTTTGTTACTCTATTT pLKO_005 2872 3UTR 100% 13.200 9.240 N DVL2 n/a
6 TRCN0000329562 ACCCATCTTGAGGCCACATTG pLKO_005 2423 3UTR 100% 10.800 7.560 N Dvl2 n/a
7 TRCN0000329631 CCACCTTCTCCTACCAGTATC pLKO_005 1855 CDS 100% 10.800 7.560 N Dvl2 n/a
8 TRCN0000329629 TACTTCACCCTCCCTCGAAAT pLKO_005 1293 CDS 100% 10.800 7.560 N Dvl2 n/a
9 TRCN0000097191 GCTGTGAGAGTTACCTAGTTA pLKO.1 1741 CDS 100% 5.625 3.938 N Dvl2 n/a
10 TRCN0000097193 CCTCATCTATGAGCACTATCA pLKO.1 1396 CDS 100% 4.950 3.465 N Dvl2 n/a
11 TRCN0000097192 CCTTGCTTCAATGGAAGGGTT pLKO.1 444 CDS 100% 2.640 1.848 N Dvl2 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_007888.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00470 pDONR223 100% 88.1% 96.6% None (many diffs) n/a
2 TRCN0000468133 AAGAGGTCGAGTGTGCGTATGTTC pLX_317 18.1% 88.1% 96.6% V5 (many diffs) n/a
3 ccsbBroad304_00470 pLX_304 35.3% 68.8% 51.9% V5 (not translated due to prior stop codon) (many diffs) n/a
4 TRCN0000489634 TACGATAGGAAGGGGGCTCTCGTC pLX_317 14.8% 88.1% 96.6% V5 (not translated due to prior stop codon) (many diffs) n/a
Download CSV