Transcript: Mouse NM_010750.3

Mus musculus mab-21-like 1 (C. elegans) (Mab21l1), mRNA.

Source:
NCBI, updated 2017-05-20
Taxon:
Mus musculus (mouse)
Gene:
Mab21l1 (17116)
Length:
2793
CDS:
485..1564

Additional Resources:

NCBI RefSeq record:
NM_010750.3
NBCI Gene record:
Mab21l1 (17116)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_010750.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000246590 ATTACTTCTTACCGAACTTAG pLKO_005 1437 CDS 100% 10.800 15.120 N Mab21l1 n/a
2 TRCN0000246589 CCTTTAAATGCACCGGGATTT pLKO_005 1002 CDS 100% 10.800 15.120 N Mab21l1 n/a
3 TRCN0000246593 AGTCGGACTGGGACGAATCTT pLKO_005 1347 CDS 100% 5.625 7.875 N Mab21l1 n/a
4 TRCN0000144537 CCGAACTTAGATCTGTTTCAA pLKO.1 1448 CDS 100% 5.625 7.875 N MAB21L1 n/a
5 TRCN0000191755 GAATAAGTACTACAACGAGAA pLKO.1 520 CDS 100% 4.050 5.670 N Mab21l1 n/a
6 TRCN0000246592 TTTCGACAAACAGGTTAATAA pLKO_005 2453 3UTR 100% 15.000 10.500 N Mab21l1 n/a
7 TRCN0000191871 GCAAACAATCTCTTCCTTTAA pLKO.1 1668 3UTR 100% 13.200 9.240 N Mab21l1 n/a
8 TRCN0000216863 GAAACTGAGAATCCGAGATAG pLKO.1 958 CDS 100% 10.800 7.560 N Mab21l1 n/a
9 TRCN0000246591 GAAACTGAGAATCCGAGATAG pLKO_005 958 CDS 100% 10.800 7.560 N Mab21l1 n/a
10 TRCN0000323035 GAAACTGAGAATCCGAGATAG pLKO_005 958 CDS 100% 10.800 7.560 N MAB21L1 n/a
11 TRCN0000215312 CATTACTTCTTACCGAACTTA pLKO.1 1436 CDS 100% 5.625 3.938 N Mab21l1 n/a
12 TRCN0000201521 CAGGAAGAAATGCCTCTCTAT pLKO.1 1222 CDS 100% 4.950 3.465 N Mab21l1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_010750.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_00958 pDONR223 100% 90.2% 100% None (many diffs) n/a
2 ccsbBroad304_00958 pLX_304 0% 90.2% 100% V5 (many diffs) n/a
3 TRCN0000474799 TGCACTATCACAGGATTGACTAAC pLX_317 37.1% 90.2% 100% V5 (many diffs) n/a
4 ccsbBroadEn_02478 pDONR223 100% 80.5% 94.1% None (many diffs) n/a
5 TRCN0000472802 ACAAATTCCAATAGAATATCATGG pLX_317 23.3% 80.5% 94.1% V5 (many diffs) n/a
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