Transcript: Human NM_015434.4

Homo sapiens integrator complex subunit 7 (INTS7), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
INTS7 (25896)
Length:
4430
CDS:
121..3009

Additional Resources:

NCBI RefSeq record:
NM_015434.4
NBCI Gene record:
INTS7 (25896)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_015434.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000156142 CGGATCTAAACCAGGACTCTT pLKO.1 2631 CDS 100% 4.950 6.930 N INTS7 n/a
2 TRCN0000416961 AGTTACAGTGTAGTTCATTTA pLKO_005 3095 3UTR 100% 13.200 10.560 N INTS7 n/a
3 TRCN0000422234 AGAGTGCTGTTACCATAATAA pLKO_005 1167 CDS 100% 15.000 10.500 N INTS7 n/a
4 TRCN0000434779 GAATCACTCAATCGGAAATAT pLKO_005 2398 CDS 100% 15.000 10.500 N INTS7 n/a
5 TRCN0000151342 GACTCCTTATGACAGCTTAAA pLKO.1 1023 CDS 100% 13.200 9.240 N INTS7 n/a
6 TRCN0000366286 GATCTTCTGATTTAGTCAAAT pLKO_005 1139 CDS 100% 13.200 9.240 N Ints7 n/a
7 TRCN0000429073 GATCTTCTGATTTAGTCAAAT pLKO_005 1139 CDS 100% 13.200 9.240 N INTS7 n/a
8 TRCN0000428689 GTATCCATTCCCTATTCTTAT pLKO_005 282 CDS 100% 13.200 9.240 N INTS7 n/a
9 TRCN0000418838 TGATTACTTCAGTACTCAATT pLKO_005 2775 CDS 100% 13.200 9.240 N INTS7 n/a
10 TRCN0000430422 TTCTCGATATGGAGATCTTTA pLKO_005 2166 CDS 100% 13.200 9.240 N INTS7 n/a
11 TRCN0000150959 GCAGTAAAGAGACTTGCTATT pLKO.1 919 CDS 100% 10.800 7.560 N INTS7 n/a
12 TRCN0000414826 TAACCAGCAGCTGGCGCTAAA pLKO_005 2589 CDS 100% 10.800 7.560 N INTS7 n/a
13 TRCN0000153218 GCAGACTCTCAAGAGATCAAT pLKO.1 3028 3UTR 100% 5.625 3.938 N INTS7 n/a
14 TRCN0000150786 GCATTCCTAAAGTTAGCTGAT pLKO.1 310 CDS 100% 4.050 2.835 N INTS7 n/a
15 TRCN0000154856 GCAGCTTGAAAGTGTCTCCAA pLKO.1 1665 CDS 100% 2.640 1.848 N INTS7 n/a
16 TRCN0000156022 CAGCCCATGCTGATAGTGAAT pLKO.1 2330 CDS 100% 4.950 2.970 N INTS7 n/a
17 TRCN0000222574 CGCCTGTAATCCCAGCACTTT pLKO.1 3199 3UTR 100% 4.950 2.475 Y ERAP2 n/a
18 TRCN0000155229 GATCAAGACCATCCTGGCTAA pLKO.1 3249 3UTR 100% 4.050 2.025 Y INTS7 n/a
19 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 3200 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_015434.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_07959 pDONR223 99.6% 99.9% 99.8% None 1274A>G n/a
2 ccsbBroad304_07959 pLX_304 0% 99.9% 99.8% V5 (not translated due to prior stop codon) 1274A>G n/a
3 ccsbBroadEn_15774 pDONR223 0% 98.5% 98.4% None 1274A>G;2274_2315del n/a
4 ccsbBroad304_15774 pLX_304 0% 98.5% 98.4% V5 1274A>G;2274_2315del n/a
5 TRCN0000465262 GATGGAACCCTTTCTCTATATGGT pLX_317 9.6% 98.5% 98.4% V5 1274A>G;2274_2315del n/a
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