Construct: ORF ccsbBroadEn_07959

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011283.1_s300c1, BRDN0000394243
DNA Barcode:
None
Epitope Tag:
None
Notes:
Has stop codon in insert

Originally Annotated References:

Gene:
INTS7 (25896)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25896 INTS7 integrator complex subunit 7 NM_015434.4 99.9% 99.8% 1274A>G
2 human 25896 INTS7 integrator complex subunit 7 NM_001199811.1 98.5% 98.4% 1274A>G;2273_2274ins42
3 human 25896 INTS7 integrator complex subunit 7 NM_001199812.1 97.8% 97.8% 1274A>G;2315_2316ins60
4 human 25896 INTS7 integrator complex subunit 7 XM_011509396.2 96.3% 96.2% 1274A>G;2314_2421del
5 human 25896 INTS7 integrator complex subunit 7 NM_001199809.1 94.8% 94.8% 223_224ins147;1127A>G
6 human 25896 INTS7 integrator complex subunit 7 NR_037667.1 62.8% (many diffs)
7 human 25896 INTS7 integrator complex subunit 7 XM_017000962.1 53.1% 50.9% (many diffs)
8 mouse 77065 Ints7 integrator complex subunit 7 NM_178632.6 85.9% 94.8% (many diffs)
9 mouse 77065 Ints7 integrator complex subunit 7 NM_001306203.1 74.8% 82.1% (many diffs)
10 mouse 77065 Ints7 integrator complex subunit 7 NM_001306204.1 74.8% 82.1% (many diffs)
11 mouse 77065 Ints7 integrator complex subunit 7 XR_865812.3 48.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2952
ORF length:
2886
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag
61tGGTCATGGC GTCAAACTCA ACTAAGTCTT TCCTGGCAGA TGCCGGCTAT GGCGAACAGG
121AACTGGATGC CAACTCTGCC CTTATGGAAT TGGACAAAGG CCTAAGATCT GGCAAACTTG
181GTGAACAGTG TGAAGCAGTT GTTCGCTTTC CCAGACTTTT TCAGAAGTAT CCATTCCCTA
241TTCTTATCAA TTCTGCATTC CTAAAGTTAG CTGATGTTTT CAGAGTTGGA AATAATTTCC
301TGAGGCTATG TGTTCTTAAA GTTACCCAAC AAAGTGAGAA ACATTTGGAG AAGATTCTAA
361ATGTGGATGA ATTTGTGAAG AGAATTTTTT CTGTGATTCA TAGTAATGAT CCTGTGGCAA
421GAGCCATCAC CCTCCGGATG TTGGGAAGTC TGGCATCAAT AATTCCTGAG AGGAAGAATG
481CTCATCATAG TATTCGTCAG AGTTTAGATT CACATGATAA TGTAGAAGTT GAAGCTGCTG
541TTTTTGCTGC TGCAAACTTC TCTGCACAGT CAAAGGATTT TGCTGTAGGA ATCTGTAACA
601AAATCAGTGA AATGATTCAA GGTTTAGCGA CACCAGTAGA CTTGAAGCTA AAATTGATAC
661CCATTCTACA GCACATGCAC CATGATGCAA TCTTGGCTTC CAGTGCTCGT CAGCTTTTAC
721AACAGCTGGT CACATCCTAT CCGTCCACCA AAATGGTGAT TGTGTCTTTG CACACTTTCA
781CTCTGCTTGC AGCGTCATCT TTGGTTGATA CACCTAAGCA GATTCAGCTT CTGTTGCAGT
841ATTTGAAGAA TGATCCCAGG AAGGCAGTAA AGAGACTTGC TATTCAAGAT CTGAAATTAC
901TTGCTAATAA AACACCACAT ACTTGGAGTA GGGAGAATAT TCAGGCACTT TGTGAGTGTG
961CCCTCCAGAC TCCTTATGAC AGCTTAAAAC TAGGGATGTT GTCTGTCCTT TCCACACTAT
1021CAGGGACCAT CGCCATCAAA CATTACTTCA GTATAGTTCC AGGAAATGTG AGTTCTTCTC
1081CCAGATCTTC TGATTTAGTC AAATTAGCCC AAGAGTGCTG TTACCATAAT AACAGGGGCA
1141TTGCAGCTCA TGGAGTTAGA GTCCTAACTA ATATAACTGT TTCTTGTCAA GAAAAGGATC
1201TTTTGGCACT GGAACAAGAT GCTGTCTTTG GCCTGGAATC CCTACTGGTA CTTTGTAGTC
1261AAGATGATAG TCCAGGTGCT CAGGCCACTT TAAAGATTGC TCTAAACTGT ATGGTGAAGT
1321TGGCCAAGGG CAGGCCCCGT CTTAGCCAGT CAGTAGTTGA GACCTTGTTG ACTCAATTGC
1381ACAGTGCTCA AGACGCTGCC CGGATTTTGA TGTGCCATTG CCTGGCAGCC ATTGCCATGC
1441AACTGCCGGT GCTGGGTGAT GGGATGCTTG GTGACCTCAT GGAGCTGTAC AAGGTGATTG
1501GACGATCAGC CACAGACAAG CAACAAGAAC TTCTGGTGAG TTTGGCTACT GTGATTTTTG
1561TTGCAAGTCA GAAGGCATTG TCTGTGGAAA GTAAGGCAGT AATTAAGCAG CAGCTTGAAA
1621GTGTCTCCAA TGGATGGACT GTATACCGTA TTGCCAGACA GGCTTCCAGA ATGGGTAATC
1681ATGACATGGC CAAAGAGCTT TATCAGAGTT TGCTGACTCA GGTTGCCTCA GAACATTTCT
1741ACTTCTGGCT AAATAGTTTG AAGGAGTTTT CACATGCAGA ACAGTGTCTC ACTGGGTTGC
1801AAGAGGAAAA TTATAGTTCA GCACTTTCTT GCATTGCTGA ATCTTTAAAA TTCTATCACA
1861AAGGGATTGC TTCCTTAACA GCAGCTAGTA CACCACTGAA TCCTTTAAGC TTTCAGTGTG
1921AATTTGTAAA ACTCAGGATT GACCTTTTAC AAGCCTTCTC TCAACTTATC TGTACTTGTA
1981ATAGCCTGAA GACAAGCCCA CCACCTGCAA TTGCCACAAC AATTGCCATG ACCTTAGGAA
2041ATGACCTCCA GAGGTGTGGT CGCATCTCCA ATCAGATGAA ACAGTCCATG GAAGAATTTC
2101GAAGCCTTGC TTCTCGATAT GGAGATCTTT ACCAGGCATC TTTTGATGCT GACTCAGCAA
2161CTTTGAGGAA TGTTGAACTA CAGCAGCAGA GCTGTTTACT GATATCTCAT GCAATAGAAG
2221CCCTGATTTT GGATCCAGAA TCAGCAAGTT TCCAGGAATA TGGATCTACT GGAACAGCCC
2281ATGCTGATAG TGAATATGAA AGAAGAATGA TGTCTGTATA TAATCATGTC TTGGAGGAGG
2341TAGAATCACT CAATCGGAAA TATACCCCTG TTTCTTATAT GCACACAGCA TGCCTCTGCA
2401ATGCCATCAT TGCTTTGCTG AAAGTTCCCC TTTCTTTCCA GAGATATTTT TTCCAGAAAC
2461TACAGTCTAC CAGCATCAAG CTTGCTCTGT CACCATCGCC CCGGAATCCT GCAGAGCCCA
2521TTGCTGTCCA GAATAACCAG CAGCTGGCGC TAAAGGTAGA GGGAGTGGTT CAGCACGGAT
2581CTAAACCAGG ACTCTTCCGC AAAATTCAGT CTGTCTGTCT GAATGTTTCT TCCACACTGC
2641AGAGTAAATC TGGACAAGAC TACAAGATAC CCATTGACAA CATGACCAAT GAGATGGAGC
2701AAAGGGTTGA ACCTCATAAT GATTACTTCA GTACTCAATT TCTGTTGAAC TTTGCTATCC
2761TTGGAACACA CAACATTACA GTGGAATCTT CTGTGAAAGA TGCCAATGGT ATAGTATGGA
2821AGACTGGTCC CAGAACTACC ATATTTGTAA AATCCCTGGA AGACCCTTAT TCCCAGCAAA
2881TTCGCTTACA ACAGCAGCAA GCCCAGCAGC CATTACAGCA GCAGCAGCAA CGCAATGCCT
2941ACACACGGTT TTAACCAact ttcttgtaca aagttggcat tataagaaag cattgcttat
3001caatttgttg caacgaac

Download FASTA (ORF) (Full)